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Report for CCDS82102.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82102.1 Public Homo sapiens 17 LRRC37B 24 110 108 CCDS HistoryNCBI Gene:114659Re-query CCDS DB by CCDS ID:82102.1Re-query CCDS DB by GeneID:114659See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82102.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000543378.7 ENSP00000443345.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000543378.7Link to Ensembl Protein Viewer:ENSP00000443345.2Re-query CCDS DB by Nucleotide ID:ENST00000543378Re-query CCDS DB by Protein ID:ENSP00000443345
Original member Current member NCBI NM_001321350.2 NP_001308279.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001321350.2Link to Protein Sequence:NP_001308279.1Re-query CCDS DB by Nucleotide ID:NM_001321350Re-query CCDS DB by Protein ID:NP_001308279Link to BLAST:NP_001308279.1

Chromosomal Locations for CCDS 82102.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 32021393 32022825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32024711 32024782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32027769 32027840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32030656 32030727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32031378 32031458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32034910 32034981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32035565 32035639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32045700 32045818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32047761 32047901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32049102 32049394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32050003 32050107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32053266 32053328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2598 nt):
ATGTCAGCCCTGCCTCAGGAACCAACTGAAAATTTGGCTCCATTCCTGAAGGAATTGGATTCAGCTGGAG
AGCTGCCCCTGGGGCCAGAGCCGTTCTTGGCTGCACATCAGGACTTAAATGACAAGCGGACTCCAGAAGA
AAGGCTCCCAGAGGTGGTTCCGCTTCTCAACCGGGATCAGAACCAGGCCCTAGTTCAGCTTCCTCGCCTC
AAGTGGGTTCAAACTACAGATCTAGATCGGGCTGCAGGTCATCAGGCAGATGAAATACTTGTTCCACTAG
ACAGTAAGGTTTCAAGACCAACCAAATTTGTTGTTTCGCCCAAGAACCTGAAGAAAGATCTAGCTGAACG
TTGGAGCCTTCCTGAGATTGTTGGGATTCCACACCAATTATCCAAACCTCAGCGTCAGAAACAGACTTTG
CCAGATGATTATTTGAGTATGGACACACTGTATCCCGGCAGCCTACCTCCAGAACTCCGGGTGAACGCAG
ATGAGCCTCCAGGGCCTCCTGAGCAAGTTGGACTTTCTCAATTCCATCTAGAGCCCAAAAGTCAAAATCC
AGAGACCCTTGAAGACATCCAGTCCTCTTCACTCCAGGAAGAAGCCCCAGCGCAGCTTCTACAGCTCCCT
CAGGAGGTAGAACCTTCAACCCAGCAGGAGGCCCCAGCTCTGCCTCCAGAGTCCTCTATGGAGAGTCTAG
CTCAAACTCCACTGAATCATGAAGTGACAGTTCAACCTCCAGGTGAGGATCAAGCTCATTATAATTTGCC
CAAGTTTACAGTCAAACCTGCAGATGTGGAGGTTACCATGACTTCAGAGCCTAAAAATGAGACAGAATCT
ACCCAAGCCCAGCAGGAGGCCCCAATTCAGCCTCCCGAGGAGGCGGAACCTTCTTCTACAGCCCTGAGGA
CTACAGATCCTCCTCCAGAACACCCTGAGGTGACACTTCCACCTTCAGACAAGGGTCAGGCTCAGCATTC
ACACCTGACTGAAGCCACAGTTCAACCTCTGGACCTGGAGCTTAGCATAACTACAGAGCCTACTACAGAG
GTTAAACCGTCTCCAACCACGGAGGAAACCTCAGCTCAGCCTCCAGACCCGGGGCTTGCCATAACTCCAG
AACCCACTACAGAGATTGGACATTCCACAGCCCTGGAGAAGACTAGAGCTCCTCATCCAGACCAGGTTCA
GACTCTGCATCGAAGCCTGACTGAAGTCACAGGTCCACCTACAAAGTTAGAATCTTCGCAGGATTCATTG
GTGCAGTCTGAAACTGCACCAGAGGAACAGAAGGCCTCCACAAGCACCAACATATGTGAGCTCTGCACCT
GCGGAGATGAGACTCTGTCATGTGTTGGTCTCAGCCCAAAGCAGAGGCTCCGCCAAGTGCCTGTGCCAGA
GCCCGACACCTACAATGGCATCTTCACCACCTTAAATTTCCAAGGAAACTATATTTCATACCTTGATGGA
AATGTATGGAAAGCATACAGTTGGACCGAGAAACTAATTCTCAGTGAAAATTATTTGACTGAATTACCTA
AGGATTCATTTGAAGGCCTGCTATACCTCCAGTATTTAGATTTATCCTGCAATAAAATACGATATATTGA
AAGACAAACATTTGAATCACTACCATTTTTGCAGTATATAAATCTGGGCTGCAATTTAATTACAAAACTG
AGCCTTGGAACATTTCAGGCCTGGCACGGAATGCAGTTTTTACACAACTTAATTCTCAATCGCAATCCTC
TGACTACTGTCGAAGATCCATATCTCTTTGAACTGCCGGCATTAAAATATCTAGACATGGGAACAACACA
CATCACACTTACAACACTTAAGAACATTCTCACGATGACTGTTGAACTGGAAAAACTGATCTTACCTAGC
CATATGGCCTGCTGCCTCTGCCAATTTAAAAATAGCATTGAGGCTGTCTGCAAGACAGTCAAGCTGCATT
GCAACACTGCATGTCTGACTAACAGCATACATTGTCCTGAAGAAGCATCTGTAGGGAATCCAGAAGGAGC
GTTCATGAAGATGTTACAAGCCCGGAAGCAGCACATGAGCACTCAGCTGACTATTGAGTCGGAGGCGCCC
TCAGACAGCAGTGGCATCAACTTGTCAGGCTTTGGGGGTGATCAGCTTGAAATTCAGCTAACCGAGCAGC
TACGGTCCCTCATCCCCAACGAGGATGTGAGAAAGTTCATGTCTCATGTTATCCGGACCTTGAAAATGGA
ATGTTCAGAAACACATGTGCAAGGGAGCTGTGCCAAGCTCATGTTGCGAACAGGCCTCCTGATGAAGCTT
CTCAGCGAGCAGCAGGAAGCAAAGGCATTGAATGTAGAATGGGATACGGACCAACAAAAAACAAATTATA
TTAATGAGAACATGGAACAGAATGAACAGAAAGAGCAGAAGTCAAGTGAGCTCATGAAAGAAGTTCCAGG
AGATGACTATAAGAACAAACTCATCTTCGCAATATCTGTGACTGTAATACTAATAATTTTGATTATAATT
TTTTGTCTTATAGAGGTGAATTCACATAAAAGGGCATCAGAAAAATACAAAGACAACCCATCAATATCAG
GAGCCTGA

Translation (865 aa):
MSALPQEPTENLAPFLKELDSAGELPLGPEPFLAAHQDLNDKRTPEERLPEVVPLLNRDQNQALVQLPRL
KWVQTTDLDRAAGHQADEILVPLDSKVSRPTKFVVSPKNLKKDLAERWSLPEIVGIPHQLSKPQRQKQTL
PDDYLSMDTLYPGSLPPELRVNADEPPGPPEQVGLSQFHLEPKSQNPETLEDIQSSSLQEEAPAQLLQLP
QEVEPSTQQEAPALPPESSMESLAQTPLNHEVTVQPPGEDQAHYNLPKFTVKPADVEVTMTSEPKNETES
TQAQQEAPIQPPEEAEPSSTALRTTDPPPEHPEVTLPPSDKGQAQHSHLTEATVQPLDLELSITTEPTTE
VKPSPTTEETSAQPPDPGLAITPEPTTEIGHSTALEKTRAPHPDQVQTLHRSLTEVTGPPTKLESSQDSL
VQSETAPEEQKASTSTNICELCTCGDETLSCVGLSPKQRLRQVPVPEPDTYNGIFTTLNFQGNYISYLDG
NVWKAYSWTEKLILSENYLTELPKDSFEGLLYLQYLDLSCNKIRYIERQTFESLPFLQYINLGCNLITKL
SLGTFQAWHGMQFLHNLILNRNPLTTVEDPYLFELPALKYLDMGTTHITLTTLKNILTMTVELEKLILPS
HMACCLCQFKNSIEAVCKTVKLHCNTACLTNSIHCPEEASVGNPEGAFMKMLQARKQHMSTQLTIESEAP
SDSSGINLSGFGGDQLEIQLTEQLRSLIPNEDVRKFMSHVIRTLKMECSETHVQGSCAKLMLRTGLLMKL
LSEQQEAKALNVEWDTDQQKTNYINENMEQNEQKEQKSSELMKEVPGDDYKNKLIFAISVTVILIILIII
FCLIEVNSHKRASEKYKDNPSISGA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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