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Report for CCDS82105.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82105.1 Public Homo sapiens 17 SPACA3 24 110 108 CCDS HistoryNCBI Gene:124912Re-query CCDS DB by CCDS ID:82105.1Re-query CCDS DB by GeneID:124912See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82105.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000394638.1 ENSP00000378134.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394638.1Link to Ensembl Protein Viewer:ENSP00000378134.1Re-query CCDS DB by Nucleotide ID:ENST00000394638Re-query CCDS DB by Protein ID:ENSP00000378134
Original member Current member NCBI NM_001317226.2 NP_001304155.1 Accepted alive Link to Nucleotide Sequence:NM_001317226.2Link to Protein Sequence:NP_001304155.1Re-query CCDS DB by Nucleotide ID:NM_001317226Re-query CCDS DB by Protein ID:NP_001304155Link to BLAST:NP_001304155.1

Chromosomal Locations for CCDS 82105.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 32991939 32991972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32996843 32997001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32997445 32997523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32997712 32997778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (339 nt):
ATGGTCTCAGCTCTGCGGGGAGCACCCCTGATCAGGGTCTGCCTTGCTTATTTCACAAGCGGTTTCAACG
CAGCTGCTTTGGACTACGAGGCTGATGGGAGCACCAACAACGGGATCTTCCAGATCAACAGCCGGAGGTG
GTGCAGCAACCTCACCCCGAACGTCCCCAACGTGTGCCGGATGTACTGCTCAGATTTGTTGAATCCTAAT
CTCAAGGATACCGTTATCTGTGCCATGAAGATAACCCAAGAGCCTCAGGGTCTGGGTTACTGGGAGGCCT
GGAGGCATCACTGCCAGGGAAAAGACCTCACTGAATGGGTGGATGGCTGTGACTTCTAG

Translation (112 aa):
MVSALRGAPLIRVCLAYFTSGFNAAALDYEADGSTNNGIFQINSRRWCSNLTPNVPNVCRMYCSDLLNPN
LKDTVICAMKITQEPQGLGYWEAWRHHCQGKDLTEWVDGCDF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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