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Report for CCDS82152.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82152.1 Public Homo sapiens 17 SNX11 24 110 108 CCDS HistoryNCBI Gene:29916Re-query CCDS DB by CCDS ID:82152.1Re-query CCDS DB by GeneID:29916See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82152.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000580219.5 ENSP00000462188.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000580219.5Link to Ensembl Protein Viewer:ENSP00000462188.1Re-query CCDS DB by Nucleotide ID:ENST00000580219Re-query CCDS DB by Protein ID:ENSP00000462188
Original member Current member EBI ENST00000582104.5 ENSP00000463948.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000582104.5Link to Ensembl Protein Viewer:ENSP00000463948.1Re-query CCDS DB by Nucleotide ID:ENST00000582104Re-query CCDS DB by Protein ID:ENSP00000463948
Original member Current member NCBI NM_001330320.2 NP_001317249.1 Accepted alive Link to Nucleotide Sequence:NM_001330320.2Link to Protein Sequence:NP_001317249.1Re-query CCDS DB by Nucleotide ID:NM_001330320Re-query CCDS DB by Protein ID:NP_001317249Link to BLAST:NP_001317249.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001317249.1 262 Q9Y5W9-2 262 100% 0 0

Chromosomal Locations for CCDS 82152.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 48112094 48112111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48112574 48112660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48113301 48113401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48118704 48118799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48118974 48119186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48121235 48121508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (789 nt):
ATGGTCTGCAGAGAACAGGAGGTGATTACAGTGCGTGTTCAGGACCCCCGAGTGCAGAATGAGGGCTCCT
GGAACTCTTATGTGGATTATAAGATATTCCTCCATACCAACAGCAAAGCCTTTACTGCCAAGACTTCCTG
TGTGCGGCGCCGCTACCGTGAGTTCGTGTGGCTGAGAAAGCAGCTACAGAGAAATGCTGGTTTGGTGCCT
GTTCCTGAACTTCCTGGGAAGTCAACCTTCTTCGGCACCTCAGATGAGTTCATTGAGAAGCGACGACAAG
GTCTGCAGCACTTCCTTGAAAAGGTCCTGCAGAGTGTGGTTCTCCTGTCAGACAGCCAGTTGCACCTATT
CCTGCAAAGCCAGCTCTCGGTGCCTGAGATAGAAGCCTGTGTCCAGGGCCGAAGTACCATGACTGTGTCT
GATGCCATTCTTCGATATGCTATGTCAAACTGTGGCTGGGCCCAGGAAGAGAGGCAGAGCTCTTCTCACC
TGGCTAAAGGAGACCAGCCTAAGAGTTGCTGCTTTCTTCCAAGATCGGGTAGGAGGAGCTCTCCCTCACC
GCCTCCCAGTGAAGAAAAGGACCATTTAGAAGTGTGGGCTCCAGTTGTTGACTCTGAGGTTCCTTCCTTG
GAAAGTCCCACTCTCCCACCCCTCTCCTCACCATTATGCTGTGATTTTGGAAGACCCAAAGAGGGAACCT
CCACTCTTCAGTCTGTGAGGAGGGCTGTGGGAGGAGATCATGCTGTGCCTTTGGACCCTGGTCAGTTAGA
AACAGTTTTGGAAAAGTGA

Translation (262 aa):
MVCREQEVITVRVQDPRVQNEGSWNSYVDYKIFLHTNSKAFTAKTSCVRRRYREFVWLRKQLQRNAGLVP
VPELPGKSTFFGTSDEFIEKRRQGLQHFLEKVLQSVVLLSDSQLHLFLQSQLSVPEIEACVQGRSTMTVS
DAILRYAMSNCGWAQEERQSSSHLAKGDQPKSCCFLPRSGRRSSPSPPPSEEKDHLEVWAPVVDSEVPSL
ESPTLPPLSSPLCCDFGRPKEGTSTLQSVRRAVGGDHAVPLDPGQLETVLEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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