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Report for CCDS8243.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8243.1 Public Homo sapiens 11 THAP12 24 110 108 CCDS HistoryNCBI Gene:5612Re-query CCDS DB by CCDS ID:8243.1Re-query CCDS DB by GeneID:5612See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8243.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000260045.8 ENSP00000260045.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000260045.8Link to Ensembl Protein Viewer:ENSP00000260045.3Re-query CCDS DB by Nucleotide ID:ENST00000260045Re-query CCDS DB by Protein ID:ENSP00000260045
Original member Current member NCBI NM_004705.4 NP_004696.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004705.4Link to Protein Sequence:NP_004696.2Re-query CCDS DB by Nucleotide ID:NM_004705Re-query CCDS DB by Protein ID:NP_004696Link to BLAST:NP_004696.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004696.2 761 O43422-1 761 100% 0 0

Chromosomal Locations for CCDS 8243.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 76350864 76352794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76355618 76355654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76360956 76361063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76365852 76365972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76380748 76380836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2286 nt):
ATGCCGAACTTCTGCGCTGCCCCCAACTGCACGCGGAAGAGCACGCAGTCCGACTTGGCCTTCTTCAGGT
TCCCGCGGGACCCTGCCAGATGCCAGAAGTGGGTGGAGAACTGTAGGAGAGCAGACTTAGAAGATAAAAC
ACCTGATCAGCTAAATAAACATTATCGATTATGTGCCAAACATTTTGAGACCTCTATGATCTGTAGAACT
AGTCCTTATAGGACAGTTCTTCGAGATAATGCAATACCAACAATATTTGATCTTACCAGTCATTTGAACA
ACCCACATAGTAGACACAGAAAACGAATAAAAGAACTGAGTGAAGATGAAATCAGGACACTGAAACAGAA
AAAAATTGATGAAACTTCTGAGCAGGAACAAAAACATAAAGAAACCAACAATAGCAATGCTCAGAACCCC
AGCGAAGAAGAGGGTGAAGGGCAAGATGAGGACATTTTACCTCTAACCCTTGAAGAGAAGGAAAACAAAG
AATACCTAAAATCTCTATTTGAAATCTTGATTCTGATGGGAAAGCAAAACATACCTCTGGATGGACATGA
GGCTGATGAAATCCCAGAAGGTCTCTTTACTCCAGATAACTTTCAGGCACTGCTGGAGTGTCGGATAAAT
TCTGGTGAAGAGGTTCTGAGAAAGCGGTTTGAGACAACAGCAGTTAACACGTTGTTTTGTTCAAAAACAC
AGCAGAGGCAGATGCTAGAGATCTGTGAGAGCTGTATTCGAGAAGAAACTCTCAGGGAAGTGAGAGACTC
ACACTTCTTTTCCATTATCACTGACGATGTAGTGGACATAGCAGGGGAAGAGCACCTACCTGTGTTGGTG
AGGTTTGTTGATGAATCTCATAACCTAAGAGAGGAATTTATAGGCTTCCTGCCTTATGAAGCCGATGCAG
AAATTTTGGCTGTGAAATTTCACACTATGATAACTGAGAAGTGGGGATTAAATATGGAGTATTGTCGTGG
CCAGGCTTACATTGTCTCTAGTGGATTTTCTTCCAAAATGAAAGTTGTTGCTTCTAGACTTTTAGAGAAA
TATCCCCAAGCTATCTACACACTCTGCTCTTCCTGTGCCTTAAATATGTGGTTGGCAAAATCAGTACCTG
TTATGGGAGTATCTGTTGCATTAGGAACAATTGAGGAAGTTTGTTCTTTTTTCCATCGATCACCACAACT
GCTTTTAGAACTTGACAACGTAATTTCTGTTCTTTTTCAGAACAGTAAAGAAAGGGGTAAAGAACTGAAG
GAAATCTGCCATTCTCAGTGGACAGGCAGGCATGATGCTTTTGAAATTTTAGTGGAACTCCTGCAAGCAC
TTGTTTTATGTTTAGATGGTATAAATAGTGACACAAATATTAGATGGAATAACTATATAGCTGGCCGAGC
ATTTGTACTCTGCAGTGCAGTGTCAGATTTTGATTTCATTGTTACTATTGTTGTTCTTAAAAATGTCCTA
TCTTTTACAAGAGCCTTTGGGAAAAACCTCCAGGGGCAAACCTCTGATGTCTTCTTTGCGGCCGGTAGCT
TGACTGCAGTACTGCATTCACTCAACGAAGTGATGGAAAATATTGAAGTTTATCATGAATTTTGGTTTGA
GGAAGCCACAAATTTGGCAACCAAACTTGATATTCAAATGAAACTCCCTGGGAAATTCCGCAGAGCTCAC
CAGGGTAACTTGGAATCTCAGCTAACCTCTGAGAGTTACTATAAAGAAACCCTAAGTGTCCCAACAGTGG
AGCACATTATTCAGGAACTTAAAGATATATTCTCAGAACAGCACCTCAAAGCTCTTAAATGCTTATCTCT
GGTACCCTCAGTCATGGGACAACTCAAATTCAATACGTCGGAGGAACACCATGCTGACATGTATAGAAGT
GACTTACCCAATCCTGACACGCTGTCAGCTGAGCTTCATTGTTGGAGAATCAAATGGAAACACAGGGGGA
AAGATATAGAGCTTCCGTCCACCATCTATGAAGCCCTCCACCTGCCTGACATCAAGTTTTTTCCTAATGT
GTATGCATTGCTGAAGGTCCTGTGTATTCTTCCTGTGATGAAGGTTGAGAATGAGCGGTATGAAAATGGA
CGAAAGCGTCTTAAAGCATATTTGAGGAACACTTTGACAGACCAAAGGTCAAGTAACTTGGCTTTGCTTA
ACATAAATTTTGATATAAAACACGACCTGGATTTAATGGTGGACACATATATTAAACTCTATACAAGTAA
GTCAGAGCTTCCTACAGATAATTCCGAAACTGTGGAAAATACCTAA

Translation (761 aa):
MPNFCAAPNCTRKSTQSDLAFFRFPRDPARCQKWVENCRRADLEDKTPDQLNKHYRLCAKHFETSMICRT
SPYRTVLRDNAIPTIFDLTSHLNNPHSRHRKRIKELSEDEIRTLKQKKIDETSEQEQKHKETNNSNAQNP
SEEEGEGQDEDILPLTLEEKENKEYLKSLFEILILMGKQNIPLDGHEADEIPEGLFTPDNFQALLECRIN
SGEEVLRKRFETTAVNTLFCSKTQQRQMLEICESCIREETLREVRDSHFFSIITDDVVDIAGEEHLPVLV
RFVDESHNLREEFIGFLPYEADAEILAVKFHTMITEKWGLNMEYCRGQAYIVSSGFSSKMKVVASRLLEK
YPQAIYTLCSSCALNMWLAKSVPVMGVSVALGTIEEVCSFFHRSPQLLLELDNVISVLFQNSKERGKELK
EICHSQWTGRHDAFEILVELLQALVLCLDGINSDTNIRWNNYIAGRAFVLCSAVSDFDFIVTIVVLKNVL
SFTRAFGKNLQGQTSDVFFAAGSLTAVLHSLNEVMENIEVYHEFWFEEATNLATKLDIQMKLPGKFRRAH
QGNLESQLTSESYYKETLSVPTVEHIIQELKDIFSEQHLKALKCLSLVPSVMGQLKFNTSEEHHADMYRS
DLPNPDTLSAELHCWRIKWKHRGKDIELPSTIYEALHLPDIKFFPNVYALLKVLCILPVMKVENERYENG
RKRLKAYLRNTLTDQRSSNLALLNINFDIKHDLDLMVDTYIKLYTSKSELPTDNSETVENT


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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