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Report for CCDS82591.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82591.1 Public Homo sapiens 20 SIRPB1 24 110 108 CCDS HistoryNCBI Gene:10326Re-query CCDS DB by CCDS ID:82591.1Re-query CCDS DB by GeneID:10326See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 82591.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000262929.9 ENSP00000262929.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000262929.9Link to Ensembl Protein Viewer:ENSP00000262929.5Re-query CCDS DB by Nucleotide ID:ENST00000262929Re-query CCDS DB by Protein ID:ENSP00000262929
Original member Current member NCBI NM_001330639.2 NP_001317568.1 Accepted alive Link to Nucleotide Sequence:NM_001330639.2Link to Protein Sequence:NP_001317568.1Re-query CCDS DB by Nucleotide ID:NM_001330639Re-query CCDS DB by Protein ID:NP_001317568Link to BLAST:NP_001317568.1

Chromosomal Locations for CCDS 82591.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 1566155 1566267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1578338 1578694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1588560 1588632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (543 nt):
ATGCCTGTCCCAGCCTCCTGGCCCCACCCTCCTTGTCCTTTCCTGCTGCTGACTCTATTGCTGGGACTCA
CAGGAGTGGCAGGTGAGGACGAGCTACAGGTGATTCAGCCTGAAAAGTCCGTATCAGTTGCAGCTGGAGA
GTCGGCCACTCTGCGCTGTGCTATGACGTCCCTGATCCCTGTGGGGCCCATCATGTGGTTTAGAGGAGCT
GGAGCAGGCCGGGAATTAATCTACAATCAGAAAGAAGGCCACTTCCCACGGGTAACAACTGTTTCAGAAC
TCACAAAGAGAAACAACCTGGACTTTTCCATCAGCATCAGTAACATCACCCCAGCAGACGCCGGCACCTA
CTACTGTGTGAAGTTCCGGAAAGGGAGCCCTGACGACGTGGAGTTTAAGTCTGGAGCAGGCACTGAGCTG
TCTGTGCGCGAAGCAGCGCTGGCTCCTACTGCTCCACTCCTCGTAGCTCTCCTCCTGGGCCCCAAGCTGC
TACTGGTGGTTGGTGTCTCTGCCATCTACATCTGCTGGAAACAGAAGGCCTGA

Translation (180 aa):
MPVPASWPHPPCPFLLLTLLLGLTGVAGEDELQVIQPEKSVSVAAGESATLRCAMTSLIPVGPIMWFRGA
GAGRELIYNQKEGHFPRVTTVSELTKRNNLDFSISISNITPADAGTYYCVKFRKGSPDDVEFKSGAGTEL
SVREAALAPTAPLLVALLLGPKLLLVVGVSAIYICWKQKA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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