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Report for CCDS8292.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8292.1 Public Homo sapiens 11 SMCO4 24 110 108 CCDS HistoryNCBI Gene:56935Re-query CCDS DB by CCDS ID:8292.1Re-query CCDS DB by GeneID:56935See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8292.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000298966.7 ENSP00000298966.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000298966.7Link to Ensembl Protein Viewer:ENSP00000298966.2Re-query CCDS DB by Nucleotide ID:ENST00000298966Re-query CCDS DB by Protein ID:ENSP00000298966
Original member Current member EBI ENST00000525141.1 ENSP00000431781.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000525141.1Link to Ensembl Protein Viewer:ENSP00000431781.1Re-query CCDS DB by Nucleotide ID:ENST00000525141Re-query CCDS DB by Protein ID:ENSP00000431781
Original member Current member EBI ENST00000527149.5 ENSP00000433555.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000527149.5Link to Ensembl Protein Viewer:ENSP00000433555.1Re-query CCDS DB by Nucleotide ID:ENST00000527149Re-query CCDS DB by Protein ID:ENSP00000433555
Original member Current member EBI ENST00000596676.2 ENSP00000479594.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000596676.2Link to Ensembl Protein Viewer:ENSP00000479594.1Re-query CCDS DB by Nucleotide ID:ENST00000596676Re-query CCDS DB by Protein ID:ENSP00000479594
Original member Current member NCBI NM_020179.3 NP_064564.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020179.3Link to Protein Sequence:NP_064564.1Re-query CCDS DB by Nucleotide ID:NM_020179Re-query CCDS DB by Protein ID:NP_064564Link to BLAST:NP_064564.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064564.1 59 Q9NRQ5 59 100% 0 0

Chromosomal Locations for CCDS 8292.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 93479010 93479189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (180 nt):
ATGCGGCAGCTCAAAGGGAAGCCCAAGAAGGAGACCTCCAAGGACAAGAAGGAGCGGAAGCAAGCCATGC
AGGAGGCCCGGCAGCAGATCACTACAGTGGTGCTGCCCACGCTGGCCGTGGTCGTGCTCTTGATCGTGGT
GTTTGTGTACGTGGCCACGCGCCCCACCATCACCGAGTGA

Translation (59 aa):
MRQLKGKPKKETSKDKKERKQAMQEARQQITTVVLPTLAVVVLLIVVFVYVATRPTITE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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