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Report for CCDS837.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
837.1 Public Homo sapiens 1 C1orf162 24 110 108 CCDS HistoryNCBI Gene:128346Re-query CCDS DB by CCDS ID:837.1Re-query CCDS DB by GeneID:128346See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 837.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000343534.9 ENSP00000344218.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000343534.9Link to Ensembl Protein Viewer:ENSP00000344218.5Re-query CCDS DB by Nucleotide ID:ENST00000343534Re-query CCDS DB by Protein ID:ENSP00000344218
Original member Current member NCBI NM_174896.4 NP_777556.1 Accepted alive Link to Nucleotide Sequence:NM_174896.4Link to Protein Sequence:NP_777556.1Re-query CCDS DB by Nucleotide ID:NM_174896Re-query CCDS DB by Protein ID:NP_777556Link to BLAST:NP_777556.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_777556.1 155 Q8NEQ5-1 155 100% 0 0

Chromosomal Locations for CCDS 837.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 111476029 111476065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 111476798 111476867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 111477334 111477428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 111477651 111477775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 111477983 111478123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (468 nt):
ATGGGAGGCAATGGCTCCACATGTAAACCCGACACTGAAAGACAAGGCACTCTCTCCACAGCAGCCCCAA
CAACTAGCCCTGCACCCTGTCTCTCTAACCACCACAACAAAAAACATTTAATCCTTGCCTTTTGTGCTGG
GGTTCTACTGACACTGCTGCTGATAGCCTTTATCTTCCTCATCATAAAGAGCTACAGAAAATATCGAAGG
GAGAGGCTTCCCATTTCCCCAGGCCCATTGCTGAGATGGGTCCCTCTTCTTTCTGGCACCATGGCAGATC
ACTCCAAGCCCCAGGCCCCAGATCCTCACTCAGATCCTCCAGCCAAGCTTTCATCCATCCCAGGGGAATC
ACTTACCTATGCCAGCACAACTTTCAAACTCTCAGAAGAAAAGAGCAATCACTTGGCTGAGAACCATTCT
GCAGACTTTGACCCCATTGTCTATGCTCAAATTAAAGTAACAAACTAA

Translation (155 aa):
MGGNGSTCKPDTERQGTLSTAAPTTSPAPCLSNHHNKKHLILAFCAGVLLTLLLIAFIFLIIKSYRKYRR
ERLPISPGPLLRWVPLLSGTMADHSKPQAPDPHSDPPAKLSSIPGESLTYASTTFKLSEEKSNHLAENHS
ADFDPIVYAQIKVTN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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