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Report for CCDS8371.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8371.1 Public Homo sapiens 11 REXO2 24 110 108 CCDS HistoryNCBI Gene:25996Re-query CCDS DB by CCDS ID:8371.1Re-query CCDS DB by GeneID:25996See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8371.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000265881.10 ENSP00000265881.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000265881.10Link to Ensembl Protein Viewer:ENSP00000265881.5Re-query CCDS DB by Nucleotide ID:ENST00000265881Re-query CCDS DB by Protein ID:ENSP00000265881
Original member Current member NCBI NM_015523.4 NP_056338.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015523.4Link to Protein Sequence:NP_056338.2Re-query CCDS DB by Nucleotide ID:NM_015523Re-query CCDS DB by Protein ID:NP_056338Link to BLAST:NP_056338.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056338.2 237 Q9Y3B8-1 237 100% 0 0

Chromosomal Locations for CCDS 8371.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 114439529 114439675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 114440656 114440739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 114443856 114443933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 114444541 114444652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 114445979 114446087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 114447826 114447879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 114449846 114449975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (714 nt):
ATGCTAGGCGGCTCCCTGGGCTCCAGGCTGTTGCGGGGTGTAGGTGGGAGTCACGGACGGTTCGGGGCCC
GAGGTGTCCGCGAAGGTGGCGCAGCCATGGCGGCAGGGGAGAGCATGGCTCAGCGGATGGTCTGGGTGGA
CCTGGAGATGACAGGATTGGACATTGAGAAGGACCAGATTATTGAGATGGCCTGTCTGATAACTGACTCT
GATCTCAACATTTTGGCTGAAGGTCCTAACCTGATTATAAAACAACCAGATGAGTTGCTGGACAGCATGT
CAGATTGGTGTAAGGAGCATCACGGGAAGTCTGGCCTTACCAAGGCAGTGAAGGAGAGTACAATTACATT
GCAGCAGGCAGAGTATGAATTTCTGTCCTTTGTACGACAGCAGACTCCTCCAGGGCTCTGTCCACTTGCA
GGAAATTCAGTTCATGAAGATAAGAAGTTTCTTGACAAATACATGCCCCAGTTCATGAAACATCTTCATT
ATAGAATAATTGATGTGAGCACTGTTAAAGAACTGTGCAGACGCTGGTATCCAGAAGAATATGAATTTGC
ACCAAAGAAGGCTGCTTCTCATAGGGCACTTGATGACATTAGTGAAAGCATCAAAGAGCTTCAGTTTTAC
CGAAATAACATCTTCAAGAAAAAAATAGATGAAAAGAAGAGGAAAATTATAGAAAATGGGGAAAATGAGA
AGACCGTGAGTTGA

Translation (237 aa):
MLGGSLGSRLLRGVGGSHGRFGARGVREGGAAMAAGESMAQRMVWVDLEMTGLDIEKDQIIEMACLITDS
DLNILAEGPNLIIKQPDELLDSMSDWCKEHHGKSGLTKAVKESTITLQQAEYEFLSFVRQQTPPGLCPLA
GNSVHEDKKFLDKYMPQFMKHLHYRIIDVSTVKELCRRWYPEEYEFAPKKAASHRALDDISESIKELQFY
RNNIFKKKIDEKKRKIIENGENEKTVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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