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Report for CCDS8376.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8376.2 Public Homo sapiens 11 APOA5 24 110 108 CCDS HistoryNCBI Gene:116519Re-query CCDS DB by CCDS ID:8376.2Re-query CCDS DB by GeneID:116519See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 8376.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000227665.9 ENSP00000227665.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000227665.9Link to Ensembl Protein Viewer:ENSP00000227665.4Re-query CCDS DB by Nucleotide ID:ENST00000227665Re-query CCDS DB by Protein ID:ENSP00000227665
Original member Current member EBI ENST00000433069.2 ENSP00000399701.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000433069.2Link to Ensembl Protein Viewer:ENSP00000399701.2Re-query CCDS DB by Nucleotide ID:ENST00000433069Re-query CCDS DB by Protein ID:ENSP00000399701
Original member Current member EBI ENST00000542499.5 ENSP00000445002.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000542499.5Link to Ensembl Protein Viewer:ENSP00000445002.1Re-query CCDS DB by Nucleotide ID:ENST00000542499Re-query CCDS DB by Protein ID:ENSP00000445002
Original member Current member NCBI NM_001166598.2 NP_001160070.1 Accepted alive Link to Nucleotide Sequence:NM_001166598.2Link to Protein Sequence:NP_001160070.1Re-query CCDS DB by Nucleotide ID:NM_001166598Re-query CCDS DB by Protein ID:NP_001160070Link to BLAST:NP_001160070.1
Original member Current member NCBI NM_001371904.1 NP_001358833.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001371904.1Link to Protein Sequence:NP_001358833.1Re-query CCDS DB by Nucleotide ID:NM_001371904Re-query CCDS DB by Protein ID:NP_001358833Link to BLAST:NP_001358833.1
Original member Current member NCBI NM_052968.5 NP_443200.2 Accepted alive Link to Nucleotide Sequence:NM_052968.5Link to Protein Sequence:NP_443200.2Re-query CCDS DB by Nucleotide ID:NM_052968Re-query CCDS DB by Protein ID:NP_443200Link to BLAST:NP_443200.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001160070.1 366 Q6Q788 366 100% 0 0
NP_001358833.1 366 Q6Q788 366 100% 0 0
NP_443200.2 366 Q6Q788 366 100% 0 0

Chromosomal Locations for CCDS 8376.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 116790128 116791067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116791586 116791697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116791812 116791860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1101 nt):
ATGGCAAGCATGGCTGCCGTGCTCACCTGGGCTCTGGCTCTTCTTTCAGCGTTTTCGGCCACCCAGGCAC
GGAAAGGCTTCTGGGACTACTTCAGCCAGACCAGCGGGGACAAAGGCAGGGTGGAGCAGATCCATCAGCA
GAAGATGGCTCGCGAGCCCGCGACCCTGAAAGACAGCCTTGAGCAAGACCTCAACAATATGAACAAGTTC
CTGGAAAAGCTGAGGCCTCTGAGTGGGAGCGAGGCTCCTCGGCTCCCACAGGACCCGGTGGGCATGCGGC
GGCAGCTGCAGGAGGAGTTGGAGGAGGTGAAGGCTCGCCTCCAGCCCTACATGGCAGAGGCGCACGAGCT
GGTGGGCTGGAATTTGGAGGGCTTGCGGCAGCAACTGAAGCCCTACACGATGGATCTGATGGAGCAGGTG
GCCCTGCGCGTGCAGGAGCTGCAGGAGCAGTTGCGCGTGGTGGGGGAAGACACCAAGGCCCAGTTGCTGG
GGGGCGTGGACGAGGCTTGGGCTTTGCTGCAGGGACTGCAGAGCCGCGTGGTGCACCACACCGGCCGCTT
CAAAGAGCTCTTCCACCCATACGCCGAGAGCCTGGTGAGCGGCATCGGGCGCCACGTGCAGGAGCTGCAC
CGCAGTGTGGCTCCGCACGCCCCCGCCAGCCCCGCGCGCCTCAGTCGCTGCGTGCAGGTGCTCTCCCGGA
AGCTCACGCTCAAGGCCAAGGCCCTGCACGCACGCATCCAGCAGAACCTGGACCAGCTGCGCGAAGAGCT
CAGCAGAGCCTTTGCAGGCACTGGGACTGAGGAAGGGGCCGGCCCGGACCCCCAGATGCTCTCCGAGGAG
GTGCGCCAGCGACTTCAGGCTTTCCGCCAGGACACCTACCTGCAGATAGCTGCCTTCACTCGCGCCATCG
ACCAGGAGACTGAGGAGGTCCAGCAGCAGCTGGCGCCACCTCCACCAGGCCACAGTGCCTTCGCCCCAGA
GTTTCAACAAACAGACAGTGGCAAGGTTCTGAGCAAGCTGCAGGCCCGTCTGGATGACCTGTGGGAAGAC
ATCACTCACAGCCTTCATGACCAGGGCCACAGCCATCTGGGGGACCCCTGA

Translation (366 aa):
MASMAAVLTWALALLSAFSATQARKGFWDYFSQTSGDKGRVEQIHQQKMAREPATLKDSLEQDLNNMNKF
LEKLRPLSGSEAPRLPQDPVGMRRQLQEELEEVKARLQPYMAEAHELVGWNLEGLRQQLKPYTMDLMEQV
ALRVQELQEQLRVVGEDTKAQLLGGVDEAWALLQGLQSRVVHHTGRFKELFHPYAESLVSGIGRHVQELH
RSVAPHAPASPARLSRCVQVLSRKLTLKAKALHARIQQNLDQLREELSRAFAGTGTEEGAGPDPQMLSEE
VRQRLQAFRQDTYLQIAAFTRAIDQETEEVQQQLAPPPPGHSAFAPEFQQTDSGKVLSKLQARLDDLWED
ITHSLHDQGHSHLGDP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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