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Report for CCDS83860.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83860.1 Public Mus musculus 11 Mmp28 23 108 98 CCDS HistoryNCBI Gene:118453Re-query CCDS DB by CCDS ID:83860.1Re-query CCDS DB by GeneID:118453See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 83860.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108137.8 ENSMUSP00000103772.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108137.8Link to Ensembl Protein Viewer:ENSMUSP00000103772.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108137Re-query CCDS DB by Protein ID:ENSMUSP00000103772
Original member Current member NCBI NM_001320300.1 NP_001307229.1 Accepted alive Link to Nucleotide Sequence:NM_001320300.1Link to Protein Sequence:NP_001307229.1Re-query CCDS DB by Nucleotide ID:NM_001320300Re-query CCDS DB by Protein ID:NP_001307229Link to BLAST:NP_001307229.1

Chromosomal Locations for CCDS 83860.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 83442551 83442945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83443759 83443926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83444211 83444360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83444821 83445066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83447520 83447744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83451386 83451573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83451660 83451739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83462748 83462858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1563 nt):
ATGGTGGCTGGCGTGAGTCTCCTGCTGCGCGCCCTGCCGCTGCTGCTGTGGGGCTGCCAGGACGCACAGC
CCACCCAGCACGGACTCCCGGAGCTGCGCCAGGAGGCAGAGGCATTCCTGGAGAAGTATGGATACCTCAG
TGAGCAGGGCTCCAAAGCCCCAGCCTCCGCACAGTTCAGGAACGCCATCAGAGAGTTCCAGTGGATATCC
CAGCTGCCCCTCAGTGGTGTGCTGGACCAGGCCACACTGCGCCAGATGACCCGCCCACGCTGTGGGGTTG
CGGATACTGACAGTCATGCCACTTGGACAGAGAGGATCAGTACCCTGCTTGCTGGACACCGAGCCAAAAT
GAGGCGTAAGAAACGCTTTGCAAAGCCAGGTAACAAATGGTACAAGCAGCATCTTTCCTACCGCCTGGTG
AACTGGCCTGAGCGCCTGCCCGAGCCAGCTGTTCGAGGGGCCGTGCGCGCTGCCTTCCAGCTGTGGAGTA
ATGTGTCAGCACTGGAGTTCTGGGAAGCCCCAGCCACGGGCCCTGCCGACATCCGCCTCACCTTCTTCCA
AGGAGACCACAATGATGGGCTGGCCAACGCCTTCGATGGCCCAGGGGGTGCCCTGGCACACGCCTTTCTG
CCCCGGCGGGGCGAAGCGCATTTCGACGGAGACGAGCGCTGGTCTCTGAGCCGCCGCCGTGGGCGCAACT
TGTTCGTGGTGCTGGCGCACGAAATCGGCCACACGCTCGGTCTCACGCACTCGCCCGCGCCACGGGCGCT
TATGGCGCCCTACTACAAGAAGCTGGGCCGCGACGCCTTGCTCAGCTGGGACGATGTGCTGGCGGTGCAG
AGCCTGTACGGAAAGCCTCTGGGACGCTCAGTAGCCACCCAACTCCCCGGAAAGGTGTTCACTGACTTTG
AGGCCTGGGACCCCCACAACTCCCAGAGCAGACGCCCGGAAACCAGAGGTCCTAAATACTGCCACTCTTC
CTTTGATGCCATCACTGTAGATGGGCAATGGCGACTGTATGTCTTCAAAGGGAGTTACTTCTGGGAAGTC
ACAGTTGATGGCAATGTTTCAGAGCCTCGTCCACTACAGAAAAGATGGCCAGGACTGCCACCTGGTATTG
AGGCTGCTGCAGTGTCTTTGGAAGATGGAGACTTCTACTTCTTTAAAGGGAATCGTTGTTGGAGGTTCCA
GGGCACGAAGTCCGTGTGGGGGTTCGCACAGCTCTGCCGGGCAGGTGGTCTACCCCGACACCCGGACGCA
GCTCTCTTCTTCCCGCCTCTGCGCCGCCTAGTCCTCTTCAAGGGTTCCCGCTACTACGTGCTAGCTCAAG
GAGGGATGCAAGTGGAGCCCTACTATCCCCGCAGCCTGCGAGACTGGGCCGGTGTCCCCGAGGAGGTCAG
CGGCGCCCTGCCAAGGCCGGATGGCTCCATTATCTTCTTCAGAGATGACCACTATTGGCATTTGGATCAA
GCCAAACTGCGGGTGACCAGCTCCGGTCGCTGGGCTACCGAGCTGTCCTGGATGGGCTGTTGGAATGCCA
ACTCAGGAGGTGCCCTGTTCTGA

Translation (520 aa):
MVAGVSLLLRALPLLLWGCQDAQPTQHGLPELRQEAEAFLEKYGYLSEQGSKAPASAQFRNAIREFQWIS
QLPLSGVLDQATLRQMTRPRCGVADTDSHATWTERISTLLAGHRAKMRRKKRFAKPGNKWYKQHLSYRLV
NWPERLPEPAVRGAVRAAFQLWSNVSALEFWEAPATGPADIRLTFFQGDHNDGLANAFDGPGGALAHAFL
PRRGEAHFDGDERWSLSRRRGRNLFVVLAHEIGHTLGLTHSPAPRALMAPYYKKLGRDALLSWDDVLAVQ
SLYGKPLGRSVATQLPGKVFTDFEAWDPHNSQSRRPETRGPKYCHSSFDAITVDGQWRLYVFKGSYFWEV
TVDGNVSEPRPLQKRWPGLPPGIEAAAVSLEDGDFYFFKGNRCWRFQGTKSVWGFAQLCRAGGLPRHPDA
ALFFPPLRRLVLFKGSRYYVLAQGGMQVEPYYPRSLRDWAGVPEEVSGALPRPDGSIIFFRDDHYWHLDQ
AKLRVTSSGRWATELSWMGCWNANSGGALF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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