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Report for CCDS83968.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83968.1 Public Mus musculus 12 Hif1a 23 108 98 CCDS HistoryNCBI Gene:15251Re-query CCDS DB by CCDS ID:83968.1Re-query CCDS DB by GeneID:15251See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 83968.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110461.7 ENSMUSP00000106088.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110461.7Link to Ensembl Protein Viewer:ENSMUSP00000106088.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110461Re-query CCDS DB by Protein ID:ENSMUSP00000106088
Original member NCBI NM_001313920.1 NP_001300849.1 Updated not alive Link to Nucleotide Sequence:NM_001313920.1Link to Protein Sequence:NP_001300849.1Re-query CCDS DB by Nucleotide ID:NM_001313920Re-query CCDS DB by Protein ID:NP_001300849
Current member NCBI NM_001313920.2 NP_001300849.1 Accepted alive Link to Nucleotide Sequence:NM_001313920.2Link to Protein Sequence:NP_001300849.1Re-query CCDS DB by Nucleotide ID:NM_001313920Re-query CCDS DB by Protein ID:NP_001300849Link to BLAST:NP_001300849.1

Chromosomal Locations for CCDS 83968.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 73926558 73926747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 73927986 73928131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 73928214 73928298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 73930657 73930769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 73932274 73932476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 73936190 73936296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 73937653 73937800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 73939529 73939749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 73940348 73940631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 73941730 73941852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 73941961 73942385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 73944079 73944187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 73944911 73945037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 73945552 73945703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2433 nt):
ATGAGTTCTGAACGTCGAAAAGAAAAGTCTAGAGATGCAGCAAGATCTCGGCGAAGCAAAGAGTCTGAAG
TTTTTTATGAGCTTGCTCATCAGTTGCCACTTCCCCACAATGTGAGCTCACATCTTGATAAAGCTTCTGT
TATGAGGCTCACCATCAGTTATTTACGTGTGAGAAAACTTCTGGATGCCGGTGGTCTAGACAGTGAAGAT
GAGATGAAGGCACAGATGGACTGTTTTTATCTGAAAGCCCTAGATGGCTTTGTGATGGTGCTAACAGATG
ACGGCGACATGGTTTACATTTCTGATAACGTGAACAAATACATGGGGTTAACTCAGTTTGAACTAACTGG
ACACAGTGTGTTTGATTTTACTCATCCATGTGACCATGAGGAAATGAGAGAAATGCTTACACACAGAAAT
GGCCCAGTGAGAAAAGGGAAAGAACTAAACACACAGCGGAGCTTTTTTCTCAGAATGAAGTGCACCCTAA
CAAGCCGGGGGAGGACGATGAACATCAAGTCAGCAACGTGGAAGGTGCTTCACTGCACGGGCCATATTCA
TGTCTATGATACCAACAGTAACCAACCTCAGTGTGGGTACAAGAAACCACCCATGACGTGCTTGGTGCTG
ATTTGTGAACCCATTCCTCATCCGTCAAATATTGAAATTCCTTTAGATAGCAAGACATTTCTCAGTCGAC
ACAGCCTCGATATGAAATTTTCTTACTGTGATGAAAGAATTACTGAGTTGATGGGTTATGAGCCGGAAGA
ACTTTTGGGCCGCTCAATTTATGAATATTATCATGCTTTGGATTCTGATCATCTGACCAAAACTCACCAT
GATATGTTTACTAAAGGACAAGTCACCACAGGACAGTACAGGATGCTTGCCAAAAGAGGTGGATATGTCT
GGGTTGAAACTCAAGCAACTGTCATATATAATACGAAGAACTCCCAGCCACAGTGCATTGTGTGTGTGAA
TTATGTTGTAAGTGGTATTATTCAGCACGACTTGATTTTCTCCCTTCAACAAACAGAATCTGTGCTCAAA
CCAGTTGAATCTTCAGATATGAAGATGACTCAGCTGTTCACCAAAGTTGAATCAGAGGATACAAGCTGCC
TTTTTGATAAGCTTAAGAAGGAGCCTGATGCTCTCACTCTGCTGGCTCCAGCTGCCGGCGACACCATCAT
CTCTCTGGATTTTGGCAGCGATGACACAGAAACTGAAGATCAACAACTTGAAGATGTTCCATTATATAAT
GATGTAATGTTTCCCTCTTCTAATGAAAAATTAAATATAAACCTGGCAATGTCTCCTTTACCTTCATCGG
AAACTCCAAAGCCACTTCGAAGTAGTGCTGATCCTGCACTGAATCAAGAGGTTGCATTAAAATTAGAATC
AAGTCCAGAGTCACTGGGACTTTCTTTTACCATGCCCCAGATTCAAGATCAGCCAGCAAGTCCTTCTGAT
GGAAGCACTAGACAAAGTTCACCTGAGCCTAACAGTCCCAGTGAATATTGCTTTGATGTGGATAGCGATA
TGGTCAATGTATTCAAGTTGGAACTGGTGGAAAAACTGTTTGCTGAAGACACAGAGGCAAAGAATCCATT
TTCAACTCAGGACACTGATTTAGATTTGGAGATGCTGGCTCCCTATATCCCAATGGATGATGATTTCCAG
TTACGTTCCTTTGATCAGTTGTCACCATTAGAGAGCAATTCTCCAAGCCCTCCAAGTATGAGCACAGTTA
CTGGGTTCCAGCAGACCCAGTTACAGAAACCTACCATCACTGCCACTGCCACCACAACTGCCACCACTGA
TGAATCAAAAACAGAGACGAAGGACAATAAAGAAGATATTAAAATACTGATTGCATCTCCATCTTCTACC
CAAGTACCTCAAGAAACGACCACTGCTAAGGCATCAGCATACAGTGGCACTCACAGTCGGACAGCCTCAC
CAGACAGAGCAGGAAAGAGAGTCATAGAACAGACAGACAAAGCTCATCCAAGGAGCCTTAACCTGTCTGC
CACTTTGAATCAAAGAAATACTGTTCCTGAGGAAGAATTAAACCCAAAGACAATAGCTTCGCAGAATGCT
CAGAGGAAGCGAAAAATGGAACATGATGGCTCCCTTTTTCAAGCAGCAGGAATTGGAACATTATTGCAGC
AACCAGGTGACTGTGCACCTACTATGTCACTTTCCTGGAAACGAGTGAAAGGATTCATATCTAGTGAACA
GAATGGAACGGAGCAAAAGACTATTATTTTAATACCCTCCGATTTAGCATGCAGACTGCTGGGGCAGTCA
ATGGATGAGAGTGGATTACCACAGCTGACCAGTTACGATTGTGAAGTTAATGCTCCCATACAAGGCAGCA
GAAACCTACTGCAGGGTGAAGAATTACTCAGAGCTTTGGATCAAGTTAACTGA

Translation (810 aa):
MSSERRKEKSRDAARSRRSKESEVFYELAHQLPLPHNVSSHLDKASVMRLTISYLRVRKLLDAGGLDSED
EMKAQMDCFYLKALDGFVMVLTDDGDMVYISDNVNKYMGLTQFELTGHSVFDFTHPCDHEEMREMLTHRN
GPVRKGKELNTQRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGHIHVYDTNSNQPQCGYKKPPMTCLVL
ICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSDHLTKTHH
DMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVVSGIIQHDLIFSLQQTESVLK
PVESSDMKMTQLFTKVESEDTSCLFDKLKKEPDALTLLAPAAGDTIISLDFGSDDTETEDQQLEDVPLYN
DVMFPSSNEKLNINLAMSPLPSSETPKPLRSSADPALNQEVALKLESSPESLGLSFTMPQIQDQPASPSD
GSTRQSSPEPNSPSEYCFDVDSDMVNVFKLELVEKLFAEDTEAKNPFSTQDTDLDLEMLAPYIPMDDDFQ
LRSFDQLSPLESNSPSPPSMSTVTGFQQTQLQKPTITATATTTATTDESKTETKDNKEDIKILIASPSST
QVPQETTTAKASAYSGTHSRTASPDRAGKRVIEQTDKAHPRSLNLSATLNQRNTVPEEELNPKTIASQNA
QRKRKMEHDGSLFQAAGIGTLLQQPGDCAPTMSLSWKRVKGFISSEQNGTEQKTIILIPSDLACRLLGQS
MDESGLPQLTSYDCEVNAPIQGSRNLLQGEELLRALDQVN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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