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Report for CCDS84042.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84042.1 Public Mus musculus 13 Mef2c 23 108 98 CCDS HistoryNCBI Gene:17260Re-query CCDS DB by CCDS ID:84042.1Re-query CCDS DB by GeneID:17260See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84042.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000199105.4 ENSMUSP00000143212.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000199105.4Link to Ensembl Protein Viewer:ENSMUSP00000143212.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000199105Re-query CCDS DB by Protein ID:ENSMUSP00000143212
Original member Current member EBI ENSMUST00000199019.4 ENSMUSP00000143401.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000199019.4Link to Ensembl Protein Viewer:ENSMUSP00000143401.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000199019Re-query CCDS DB by Protein ID:ENSMUSP00000143401
Original member NCBI NM_001347564.1 NP_001334493.1 Updated not alive Link to Nucleotide Sequence:NM_001347564.1Link to Protein Sequence:NP_001334493.1Re-query CCDS DB by Nucleotide ID:NM_001347564Re-query CCDS DB by Protein ID:NP_001334493
Current member NCBI NM_001347564.2 NP_001334493.1 Accepted alive Link to Nucleotide Sequence:NM_001347564.2Link to Protein Sequence:NP_001334493.1Re-query CCDS DB by Nucleotide ID:NM_001347564Re-query CCDS DB by Protein ID:NP_001334493Link to BLAST:NP_001334493.1
Original member NCBI NM_001347566.1 NP_001334495.1 Updated not alive Link to Nucleotide Sequence:NM_001347566.1Link to Protein Sequence:NP_001334495.1Re-query CCDS DB by Nucleotide ID:NM_001347566Re-query CCDS DB by Protein ID:NP_001334495
Current member NCBI NM_001347566.2 NP_001334495.1 Accepted alive Link to Nucleotide Sequence:NM_001347566.2Link to Protein Sequence:NP_001334495.1Re-query CCDS DB by Nucleotide ID:NM_001347566Re-query CCDS DB by Protein ID:NP_001334495Link to BLAST:NP_001334495.1
Original member NCBI NM_001347567.1 NP_001334496.1 Updated not alive Link to Nucleotide Sequence:NM_001347567.1Link to Protein Sequence:NP_001334496.1Re-query CCDS DB by Nucleotide ID:NM_001347567Re-query CCDS DB by Protein ID:NP_001334496
Current member NCBI NM_001347567.2 NP_001334496.1 Accepted alive Link to Nucleotide Sequence:NM_001347567.2Link to Protein Sequence:NP_001334496.1Re-query CCDS DB by Nucleotide ID:NM_001347567Re-query CCDS DB by Protein ID:NP_001334496Link to BLAST:NP_001334496.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001334493.1 474 Q8CFN5-1 474 100% 0 0
NP_001334495.1 474 Q8CFN5-1 474 100% 0 0
NP_001334496.1 474 Q8CFN5-1 474 100% 0 0

Chromosomal Locations for CCDS 84042.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 83575677 83575730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 83592778 83592981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 83625265 83625408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 83633055 83633241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 83635422 83635469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 83652814 83652986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 83654598 83654621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 83655507 83655636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 83656217 83656352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 83662307 83662631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1425 nt):
ATGGGGAGAAAAAAGATTCAGATTACGAGGATAATGGATGAGCGTAACAGACAGGTGACTTTTACGAAGA
GGAAATTTGGATTGATGAAGAAGGCTTATGAGCTGAGCGTGCTGTGCGACTGTGAGATTGCACTGATCAT
CTTCAACAGCACCAACAAGCTGTTCCAGTACGCCAGCACTGACATGGATAAGGTGTTGCTCAAGTACACC
GAGTACAACGAGCCGCACGAGAGCCGGACAAACTCAGACATTGTGGAGACATTGAGAAAGAAGGGCCTCA
ATGGCTGTGACAGCCCAGATCCCGATGCAGACGATTCAGTAGGTCACAGCCCTGAGTCTGAGGACAAGTA
CAGGAAAATTAACGAAGATATTGATCTAATGATCAGCAGGCAAAGATTGTGTGCTGTTCCACCTCCCAGC
TTTGAGATGCCAGTTACCATCCCAGTGTCCAGCCATAACAGTTTGGTGTACAGCAATCCTGTCAGCACAC
TGGGAAACCCCAATCTTCTGCCACTGGCCCACCCGTCTCTGCAGAGGAATAGTATGTCTCCTGGTGTAAC
ACATAGACCTCCAAGTGCAGGTAACACAGGCGGTCTGATGGGCGGAGATCTGACATCCGGTGCAGGCACC
AGCGCAGGGAATGGATACGGCAACCCCCGGAACTCACCAGGCCTGCTGGTCTCACCTGGTAACCTGAACA
AGAATATACAAGCCAAATCTCCTCCCCCTATGAATCTAGGAATGAATAATCGTAAGCCAGATCTCCGCGT
TCTTATCCCACCTGGCAGCAAGAACACGATGCCATCAGTGTCTGAGGATGTGGATCTGCTGTTGAATCAA
AGGATAAATAACTCCCAGTCGGCTCAGTCATTGGCTACCCCGGTGGTTTCCGTAGCAACTCCTACTTTAC
CAGGACAAGGAATGGGAGGATATCCATCAGCCATTTCAACAACATATGGTACTGAGTACTCTCTGAGTAG
CGCAGATCTGTCATCTCTGTCTGGCTTCAACACTGCCAGTGCGCTCCACCTCGGCTCTGTAACTGGCTGG
CAGCAGCAGCACCTACATAACATGCCGCCATCTGCCCTCAGTCAGTTGGGAGCTTGCACTAGCACTCATT
TATCTCAGAGTTCAAATCTCTCCCTGCCTTCTACTCAAAGCCTCAGCATCAAGTCAGAACCTGTTTCTCC
TCCTAGAGACCGTACCACCACCCCTTCGAGATACCCACAACACACCACGCGCCACGAGGCGGGGAGGTCT
CCTGTTGACAGCTTGAGCAGCTGTAGCAGTTCCTACGATGGGAGCGACCGAGAGGATCACCGGAACGAAT
TCCACTCCCCCATTGGACTCACCAGACCTTCGCCGGACGAAAGGGAAAGTCCTTCAGTCAAGCGCATGCG
ACTCTCTGAAGGATGGGCAACATGA

Translation (474 aa):
MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKYT
EYNEPHESRTNSDIVETLRKKGLNGCDSPDPDADDSVGHSPESEDKYRKINEDIDLMISRQRLCAVPPPS
FEMPVTIPVSSHNSLVYSNPVSTLGNPNLLPLAHPSLQRNSMSPGVTHRPPSAGNTGGLMGGDLTSGAGT
SAGNGYGNPRNSPGLLVSPGNLNKNIQAKSPPPMNLGMNNRKPDLRVLIPPGSKNTMPSVSEDVDLLLNQ
RINNSQSAQSLATPVVSVATPTLPGQGMGGYPSAISTTYGTEYSLSSADLSSLSGFNTASALHLGSVTGW
QQQHLHNMPPSALSQLGACTSTHLSQSSNLSLPSTQSLSIKSEPVSPPRDRTTTPSRYPQHTTRHEAGRS
PVDSLSSCSSSYDGSDREDHRNEFHSPIGLTRPSPDERESPSVKRMRLSEGWAT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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