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Report for CCDS84112.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84112.1 Public Mus musculus 14 Ccser2 23 108 98 CCDS HistoryNCBI Gene:72972Re-query CCDS DB by CCDS ID:84112.1Re-query CCDS DB by GeneID:72972See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84112.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000182042.1 ENSMUSP00000138453.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000182042.1Link to Ensembl Protein Viewer:ENSMUSP00000138453.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000182042Re-query CCDS DB by Protein ID:ENSMUSP00000138453
Original member Current member NCBI NM_001347503.1 NP_001334432.1 Accepted alive Link to Nucleotide Sequence:NM_001347503.1Link to Protein Sequence:NP_001334432.1Re-query CCDS DB by Nucleotide ID:NM_001347503Re-query CCDS DB by Protein ID:NP_001334432Link to BLAST:NP_001334432.1

Chromosomal Locations for CCDS 84112.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 36879668 36879762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 36890342 36890426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 36896255 36896344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 36898164 36898250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 36900762 36900845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 36909017 36909212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 36918434 36918582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (786 nt):
ATGAACCGCTTTGACCGAACAGACAGAAATGTACGACAGTCGCAGGACGGATTTTGGAAAAGGCCACCCC
AGAGGTGGAGTGGACAGGACCATTACCACCTCAGCCACCCTGGTCACTATCATCACCATGGACAAAGTGA
CTTGAGCAGAGGCTCTCCTTATAGAGAATCTCCTTTGGGTCATTTTGAAAGCTATGGAGGGACCCCCTTT
TTCCAGGCTCAGAAGATGTTTGTAGATGTGCCCGACAACACAGTGATCCTGGATGAGATGACCCTCCGGC
ACATGGTCCAGGATTGCACAGCTGTGAAAACGCAGTTACTGAAACTCAAGCGTCTGTTACACCAGCATGA
CGGAAGTGGATCATTGCATGATGTTCAGCTCTCATTGCCATCCAGTCCAGAGCCAGAAGACGGTGATCAG
ATATATAAGAATGAAGATTTACTAAATGAAATAACACAACTTAAAGAGGAAATAAAGAAAAAAGATGAAA
AAATCCAACTATTAGAGCAGCAGCTTGCAACTCGATGTAACTGTCAGCAGAAATCTAAAGAGGAAAAGTG
TACATATGCTGATAAATATACCCAGACACCCTGGAGACGGATTCCTGGTGGGTATTGTGCACCCTCCTTC
TCTCCTTGGCAGGGCTCCTTCCAGGGGATGCCACGGACTGTACCGCCGCACCGCAGACAGACCTCAAGTA
CTACAGCCTTCCAGCAGCCTTCCCAGATCTACAGACCACGCCCAGGGAAAACTAATAAAGCCACAACGTA
CCGAGGCCCACAGTGA

Translation (261 aa):
MNRFDRTDRNVRQSQDGFWKRPPQRWSGQDHYHLSHPGHYHHHGQSDLSRGSPYRESPLGHFESYGGTPF
FQAQKMFVDVPDNTVILDEMTLRHMVQDCTAVKTQLLKLKRLLHQHDGSGSLHDVQLSLPSSPEPEDGDQ
IYKNEDLLNEITQLKEEIKKKDEKIQLLEQQLATRCNCQQKSKEEKCTYADKYTQTPWRRIPGGYCAPSF
SPWQGSFQGMPRTVPPHRRQTSSTTAFQQPSQIYRPRPGKTNKATTYRGPQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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