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Report for CCDS84177.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84177.1 Public Mus musculus 15 Sh3bp1 23 108 98 CCDS HistoryNCBI Gene:20401Re-query CCDS DB by CCDS ID:84177.1Re-query CCDS DB by GeneID:20401See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84177.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109698.8 ENSMUSP00000105320.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109698.8Link to Ensembl Protein Viewer:ENSMUSP00000105320.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109698Re-query CCDS DB by Protein ID:ENSMUSP00000105320
Original member NCBI NM_001316685.1 NP_001303614.1 Updated not alive Link to Nucleotide Sequence:NM_001316685.1Link to Protein Sequence:NP_001303614.1Re-query CCDS DB by Nucleotide ID:NM_001316685Re-query CCDS DB by Protein ID:NP_001303614
Current member NCBI NM_001316685.2 NP_001303614.1 Accepted alive Link to Nucleotide Sequence:NM_001316685.2Link to Protein Sequence:NP_001303614.1Re-query CCDS DB by Nucleotide ID:NM_001316685Re-query CCDS DB by Protein ID:NP_001303614Link to BLAST:NP_001303614.1

Chromosomal Locations for CCDS 84177.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 78899903 78899961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78901146 78901188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78901399 78901503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78902555 78902631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78902854 78902965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78903059 78903135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78903553 78903697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78904270 78904338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78904464 78904554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78905030 78905175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78905771 78905882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78906256 78906337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78906423 78906503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78907214 78907330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78907961 78908058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78908353 78908512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78910008 78910099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78911930 78912018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1755 nt):
ATGATGAAGAGGCAGTTGCACCGCATGCGGCAGCTGGCCCACACGGGCAGCTCGGGACGCACCCCGGAGA
CTGCCGAGTTTTTGGGTGAGGACCTGCTGCAGGTAGAGCAACGGCTGGAGCCAGCTAAACGAGCAGCCCA
CAATGTTCACAAACGGCTGCAGGCCTGTCTGCAGGGCCAAAGCGGGGCTGACATGGACAAGCGGGTGAAG
AAGCTTCCTCTCATGGCTCTTTCTACCACGATGGCAGAGAGCTTCAAGGAACTGGATCCTGATTCCAGCA
TGGGGAAGGCCTTGGAGATGACCTGCGCCATCCAGAACCAGCTGGCCCGAATCCTAGCCGAGTTTGAGAT
GACCCTGGAGAGGGATGTCCTGCAGCCGCTCAGCAGGCTGAGCGAGGAGGAGCTGCCTGCCATCCTGAAG
CACAAGAAAAGCCTTCAGAAGCTGGTGTCTGACTGGAACACCCTCAAAAGCAGGCTCAGCCAGGCAGCCA
AGAACTCAGGAAGCAACCAAGGCCTGGGTGGTGCCTCAGGCAGTCACACCCACACCACCACTGCCAACAA
GGTAGAGATGCTGAAGGAGGAAGAGGAGGAGCTCAAGAAGAAGGTGGAACAGTGCAAGGACGAGTACCTG
GCCGATCTCTACCACTTCTCCACCAAGGAGGATTCTTATGCCAACTACTTTATTCATCTCTTGGAGATTC
AGGCTGACTACCACCGCAAGTCACTGACCTCACTCGACACGGCCCTAGCTGAGCTGAGGGACAACCACAG
CCAAGCAGACCACTCCCCCTTGACGACGGCTGCCCCCTTCTCCAGGGTATATGGGGTATCTTTGAGAACC
CACCTACAAGACCTAGGCCGTGACATTGCCCTGCCCATCGAGGCCTGCGTCCTGTTGCTGCTGTCAGAGG
GCATGCAGGAGGAGGGCCTCTTCCGTCTGGCTGCTGGGGCCTCTGTGCTGAAGCGCCTTAAGCAGACCAT
GGCCTCAGATCCCCACAGCCTAGAGGAATTCTGCTCAGACCCCCATGCTGTAGCAGGTGCCCTCAAGTCC
TATCTCCGGGAGCTGCCGGAGCCCCTGATGACCTCTGACCTCTACGATGACTGGATGAGAGCAGCCAGCC
TGAAGGAGCCAGGAGCCCGCCTGGAAGCCCTCCATGATGTTTGCAGCCGTCTACCCCAAGAGAACTTCAA
CAACCTCAGGTACCTGATGAAGTTCCTGGCTCTGCTGGCAGAGGAGCAGGATGTAAACAAGATGACACCC
AGCAACATCGCCATTGTCCTAGGACCCAACCTGCTGTGGCCTCCCGAGAAAGAAGGGGACCAGGCCCAAC
TGGACGCTGCCTCTGTGTCCTCCATTCAGGTGGTGGGTGTTGTCGAGGCGCTGATACAGAACGCAGACAC
CCTCTTCCCTGGAGATATCAACTTCAATGTATCAGGCATCTTCCCAGGCCTGGCCCCCCAGGAGAAGGTC
AGTAGCCAACAGGTCTCAGAGGAGTTGCCACCTGTTACTGTGCCTGCCCCAGCCACGACCCCAGCTCCCA
CCCCGGCTCCAGCCTCAATGGCTGTCAGAGAAAGGACAGAGGCTGACTTGCCCAAACCAACTTCTCCCAA
GGTCAGCAGGAACCCCACCGAAACAGCTGCTTCGGCGGAGGACATGACCCGTAAGAGGTCTCAAGGGAGC
TACCAGAAGGAAGAACAGACTTGCCTGTTCCTAGAGGACTTTTATTTTTTTTCTCTTGCCAATGTATTTT
TGTAA

Translation (584 aa):
MMKRQLHRMRQLAHTGSSGRTPETAEFLGEDLLQVEQRLEPAKRAAHNVHKRLQACLQGQSGADMDKRVK
KLPLMALSTTMAESFKELDPDSSMGKALEMTCAIQNQLARILAEFEMTLERDVLQPLSRLSEEELPAILK
HKKSLQKLVSDWNTLKSRLSQAAKNSGSNQGLGGASGSHTHTTTANKVEMLKEEEEELKKKVEQCKDEYL
ADLYHFSTKEDSYANYFIHLLEIQADYHRKSLTSLDTALAELRDNHSQADHSPLTTAAPFSRVYGVSLRT
HLQDLGRDIALPIEACVLLLLSEGMQEEGLFRLAAGASVLKRLKQTMASDPHSLEEFCSDPHAVAGALKS
YLRELPEPLMTSDLYDDWMRAASLKEPGARLEALHDVCSRLPQENFNNLRYLMKFLALLAEEQDVNKMTP
SNIAIVLGPNLLWPPEKEGDQAQLDAASVSSIQVVGVVEALIQNADTLFPGDINFNVSGIFPGLAPQEKV
SSQQVSEELPPVTVPAPATTPAPTPAPASMAVRERTEADLPKPTSPKVSRNPTETAASAEDMTRKRSQGS
YQKEEQTCLFLEDFYFFSLANVFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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