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Report for CCDS84255.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84255.1 Public Mus musculus 16 Grik1 23 108 98 CCDS HistoryNCBI Gene:14805Re-query CCDS DB by CCDS ID:84255.1Re-query CCDS DB by GeneID:14805See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84255.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072256.12 ENSMUSP00000072107.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072256.12Link to Ensembl Protein Viewer:ENSMUSP00000072107.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000072256Re-query CCDS DB by Protein ID:ENSMUSP00000072107
Original member NCBI NM_146072.4 NP_666184.2 Updated not alive Link to Nucleotide Sequence:NM_146072.4Link to Protein Sequence:NP_666184.2Re-query CCDS DB by Nucleotide ID:NM_146072Re-query CCDS DB by Protein ID:NP_666184
Current member NCBI NM_146072.5 NP_666184.3 Accepted alive Link to Nucleotide Sequence:NM_146072.5Link to Protein Sequence:NP_666184.3Re-query CCDS DB by Nucleotide ID:NM_146072Re-query CCDS DB by Protein ID:NP_666184Link to BLAST:NP_666184.3

Chromosomal Locations for CCDS 84255.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 87896196 87896351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87896809 87896895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87914154 87914404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87923077 87923302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87935898 87936115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87940538 87940656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87946545 87946768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87947794 87947997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87950028 87950141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87957490 87957597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87995915 87996058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88006349 88006522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88009705 88009758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88034155 88034336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88051335 88051592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88056008 88056175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88289585 88289702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2805 nt):
ATGGAGCGCGGCACAGTCCTTATCCAACCCGGGCTCTGGACCAGGGACACCAGCTGGACACTCCTCTATT
TCCTGTGCTACATCCTTCCTCAGACCTCCCCTCAAGTGCTCAGGATCGGAGGGATTTTTGAAACTGTGGA
AAACGAACCTGTTAATGTTGAAGAATTAGCTTTCAAGTTTGCAGTCACCAGTATTAACCGAAACCGAACC
TTGATGCCCAATACCACATTAACCTATGACATCCAGAGAATTAATCTTTTTGATAGTTTTGAAGCCTCCC
GAAGAGCATGCGACCAACTGGCTCTTGGGGTGGCCGCCCTCTTCGGTCCTTCCCACAGCTCCTCCGTCAG
TGCTGTACAGTCTATTTGCAATGCTCTGGAAGTTCCACACATTCAGACTCGCTGGAAACACCCTTCTGTG
GACAACAGAGACTTATTTTACATCAACCTCTACCCAGATTATGCAGCTATCAGCAGGGCAGTCCTGGATC
TGGTCCTCTATTACAACTGGAAAACAGTGACGGTGGTGTACGAAGACAGCACAGGTCTAATTCGTCTGCA
AGAGCTCATCAAAGCTCCCTCCAGATACAACATCAAAATCAAAATCCGCCAGCTTCCCTCTGGCAATAAG
GATGCCAAACCTCTGCTCAAGGAGATGAAGAAAGGCAAGGAGTTCTATGTGATATTTGATTGTTCGCACG
AGACGGCTGCTGAAATTCTTAAGCAGATTTTGTTCATGGGCATGATGACTGAATACTATCACTACTTCTT
CACAACCCTGGACTTGTTTGCTTTGGATCTGGAACTCTACAGGTACAGTGGTGTAAATATGACTGGATTT
CGGTTGCTGAATATTGACAACCCTCACGTGTCATCCATCATTGAGAAGTGGTCCATGGAGAGATTGCAGG
CCCCACCCAGACCTGAGACTGGTCTCCTGGACGGCGTGATGACAACTGAAGCAGCTCTGATGTACGATGC
TGTGTACATGGTAGCCATCGCCTCTCACCGTGCCTCTCAGCTGACCGTCAGTTCCCTGCAGTGCCATCGA
CATAAGCCATGGCGCCTAGGACCCAGATTTATGAACCTCATCAAAGAGGCGCGGTGGGATGGCTTGACGG
GGCGGATCACCTTCAATAAGACGGATGGCTTGAGAAAGGATTTTGACCTGGACATTATCAGTCTCAAAGA
GGAAGGAACTGAAAAGATTGGGATTTGGAACTCCAACAGTGGGCTGAACATGACGGATGGCAACAGAGAC
AGGTCCAACAATATCACAGATTCGCTGGCTAACCGAACGCTCATTGTCACCACTATTCTGGAAGAGCCCT
ACGTGATGTACAGGAAATCCGATAAACCACTGTACGGAAATGACAGATTTGAAGGATATTGCCTGGATCT
GCTGAAAGAACTGTCAAATATCCTAGGTTTCCTTTATGATGTTAAACTGGTTCCTGACGGCAAATATGGA
GCCCAGAATGACAAAGGGGAGTGGAACGGGATGGTTAAGGAACTCATCGACCACAGAGCTGACCTAGCAG
TGGCCCCTCTCACCATCACGTATGTACGGGAGAAAGTCATTGACTTCTCCAAGCCTTTCATGACTCTGGG
CATTAGCATCCTTTACCGGAAGCCCAATGGAACCAACCCCGGCGTCTTCTCCTTCCTCAACCCCCTGTCT
CCAGACATTTGGATGTATGTGCTCCTCGCTTGCCTAGGAGTCAGTTGTGTGCTTTTTGTGATTGCAAGGT
TCACACCCTACGAGTGGTATAACCCCCACCCGTGCAACCCTGACTCAGACGTGGTGGAAAACAATTTCAC
TTTGCTAAATAGTTTCTGGTTTGGCGTTGGAGCTCTCATGCAGCAAGGATCGGAGCTGATGCCCAAGGCT
CTATCGACCAGAATAGTTGGAGGAATATGGTGGTTTTTCACCCTAATCATCATCTCATCCTACACTGCCA
ACCTGGCTGCCTTCTTGACAGTAGAAAGGATGGAATCCCCCATCGATTCCGCAGACGACCTGGCCAAACA
AACCAAGATAGAATACGGGGCAGTCAGAGATGGCTCGACAATGACCTTCTTCAAGAAATCAAAAATCTCC
ACGTATGAGAAAATGTGGGCTTTCATGAGCAGTAGACAGCAGAGCGCCCTGGTTAAAAACAGCGATGAGG
GGATCCAAAGGGTGCTTACCACCGACTACGCCCTGCTGATGGAGTCCACCAGCATTGAGTATGTGACACA
GAGGAACTGCAACCTCACTCAGATCGGGGGCCTCATAGACTCCAAAGGCTATGGAGTGGGGACACCTATC
GGCTCCCCTTACCGGGATAAAATTACAATTGCTATTCTTCAACTACAAGAAGAAGGGAAGCTTCATATGA
TGAAAGAGAAATGGTGGAGGGGAAATGGCTGCCCTGAAGAAGACAGTAAAGAAGCCAGTGCTCTAGGAGT
GGAAAATATCGGGGGTATCTTCATTGTTCTGGCTGCAGGACTCGTCCTTTCTGTGTTTGTAGCCATTGGA
GAATTCATATACAAATCACGGAAGAACAATGACATTGAGCAGAAAGGAAAGTCATCAAGACTTAGATTTT
ATTTTAGGAACAAAGTAAGGTTTCATGGGAGCAAAACAGAAAGCCTTGGTGTAGAGAAGTGTCTCTCTTT
CAATGCCATCATGGAAGAGCTGGGAATCTCACTCAAGAATCAGAAAAAATTAAAGAAAAAGTCAAGAACT
AAGGGCAAATCTTCTTTCACAAGTATCCTTACTTGTCATCAGAGACGAACTCAGAGAAAAGAGACTGTGG
CGTGA

Translation (934 aa):
MERGTVLIQPGLWTRDTSWTLLYFLCYILPQTSPQVLRIGGIFETVENEPVNVEELAFKFAVTSINRNRT
LMPNTTLTYDIQRINLFDSFEASRRACDQLALGVAALFGPSHSSSVSAVQSICNALEVPHIQTRWKHPSV
DNRDLFYINLYPDYAAISRAVLDLVLYYNWKTVTVVYEDSTGLIRLQELIKAPSRYNIKIKIRQLPSGNK
DAKPLLKEMKKGKEFYVIFDCSHETAAEILKQILFMGMMTEYYHYFFTTLDLFALDLELYRYSGVNMTGF
RLLNIDNPHVSSIIEKWSMERLQAPPRPETGLLDGVMTTEAALMYDAVYMVAIASHRASQLTVSSLQCHR
HKPWRLGPRFMNLIKEARWDGLTGRITFNKTDGLRKDFDLDIISLKEEGTEKIGIWNSNSGLNMTDGNRD
RSNNITDSLANRTLIVTTILEEPYVMYRKSDKPLYGNDRFEGYCLDLLKELSNILGFLYDVKLVPDGKYG
AQNDKGEWNGMVKELIDHRADLAVAPLTITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNPLS
PDIWMYVLLACLGVSCVLFVIARFTPYEWYNPHPCNPDSDVVENNFTLLNSFWFGVGALMQQGSELMPKA
LSTRIVGGIWWFFTLIIISSYTANLAAFLTVERMESPIDSADDLAKQTKIEYGAVRDGSTMTFFKKSKIS
TYEKMWAFMSSRQQSALVKNSDEGIQRVLTTDYALLMESTSIEYVTQRNCNLTQIGGLIDSKGYGVGTPI
GSPYRDKITIAILQLQEEGKLHMMKEKWWRGNGCPEEDSKEASALGVENIGGIFIVLAAGLVLSVFVAIG
EFIYKSRKNNDIEQKGKSSRLRFYFRNKVRFHGSKTESLGVEKCLSFNAIMEELGISLKNQKKLKKKSRT
KGKSSFTSILTCHQRRTQRKETVA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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