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Report for CCDS84338.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84338.1 Public Mus musculus 17 Nrxn1 23 108 98 CCDS HistoryNCBI Gene:18189Re-query CCDS DB by CCDS ID:84338.1Re-query CCDS DB by GeneID:18189See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84338.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000173917.7 ENSMUSP00000133389.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000173917.7Link to Ensembl Protein Viewer:ENSMUSP00000133389.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000173917Re-query CCDS DB by Protein ID:ENSMUSP00000133389
Original member NCBI NM_001347419.1 NP_001334348.1 Updated not alive Link to Nucleotide Sequence:NM_001347419.1Link to Protein Sequence:NP_001334348.1Re-query CCDS DB by Nucleotide ID:NM_001347419Re-query CCDS DB by Protein ID:NP_001334348
Current member NCBI NM_001347419.2 NP_001334348.1 Accepted alive Link to Nucleotide Sequence:NM_001347419.2Link to Protein Sequence:NP_001334348.1Re-query CCDS DB by Nucleotide ID:NM_001347419Re-query CCDS DB by Protein ID:NP_001334348Link to BLAST:NP_001334348.1

Chromosomal Locations for CCDS 84338.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 90037077 90037384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 90059476 90059563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 90088165 90088197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (429 nt):
ATGGATATGAGATGGCACTGTGAAAACTCGCAGACCACAGATGACATCCTTGTGGCCTCGGCAGAGTGTC
CCAGTGACGATGAGGACATTGACCCCTGTGAGCCGAGCTCAGGTGGGTTAGCCAACCCCACCAGAGTAGG
TGGCCGTGAACCATACCCAGGCTCTGCAGAGGTGATTCGGGAGTCCAGCAGTACCACTGGCATGGTGGTG
GGGATTGTCGCAGCAGCCGCTCTGTGCATCCTCATCCTCCTCTATGCCATGTACAAGTACAGGAACCGGG
ATGAAGGGTCGTACCACGTGGATGAGAGTCGAAACTACATCAGTAACTCAGCACAGTCCAATGGGGCTGT
GGTCAAGGAGAAGCAACCCAGCAGTGCTAAAAGCGCCAACAAAAACAAGAAAAACAAGGATAAGGAGTAT
TACGTCTGA

Translation (142 aa):
MDMRWHCENSQTTDDILVASAECPSDDEDIDPCEPSSGGLANPTRVGGREPYPGSAEVIRESSSTTGMVV
GIVAAAALCILILLYAMYKYRNRDEGSYHVDESRNYISNSAQSNGAVVKEKQPSSAKSANKNKKNKDKEY
YV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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