NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS84442.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84442.1 Public Mus musculus 19 Dnmbp 23 108 98 CCDS HistoryNCBI Gene:71972Re-query CCDS DB by CCDS ID:84442.1Re-query CCDS DB by GeneID:71972See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84442.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000212592.1 ENSMUSP00000148421.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000212592.1Link to Ensembl Protein Viewer:ENSMUSP00000148421.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000212592Re-query CCDS DB by Protein ID:ENSMUSP00000148421
Original member NCBI NM_001306088.1 NP_001293017.1 Updated not alive Link to Nucleotide Sequence:NM_001306088.1Link to Protein Sequence:NP_001293017.1Re-query CCDS DB by Nucleotide ID:NM_001306088Re-query CCDS DB by Protein ID:NP_001293017
Current member NCBI NM_001306088.2 NP_001293017.1 Accepted alive Link to Nucleotide Sequence:NM_001306088.2Link to Protein Sequence:NP_001293017.1Re-query CCDS DB by Nucleotide ID:NM_001306088Re-query CCDS DB by Protein ID:NP_001293017Link to BLAST:NP_001293017.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001293017.1 823 Q6TXD4-2 823 99.757% 0 2

Chromosomal Locations for CCDS 84442.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 43848093 43848278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43849776 43850326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43852224 43852422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43854133 43854312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43854797 43855129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43856502 43856630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43866589 43866693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43867527 43867657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43868805 43869004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43869589 43869606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43870162 43870309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43874158 43874257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43874827 43875018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2472 nt):
ATGACGCTCCTCTCTTCCCAGTCTTCATCCCTGGCGGCCCCCTTTGGGTCTGTGTCCACTGAAAACCCAG
AGCAGAGGATGCTGGAGAAGAGAGCCAAGGTGGTGGCGGAGCTTTTGCAGACGGAGAGAGACTACATCCG
GGATCTGGAGATGTGCATTGAGAGGGTCATGGTGCCCCTGCAGCAGGCACAGGTACCAAACGTTGATTTT
GAAGGACTTTTTGGAAATATGCAAACAGTGATTAAAGTCTCAAAGCAATTGTTGGCGGCCTTGGAAATCA
GCGATGCTGTAGGACCCGTGTTTCTTGACCACCGAGACGAGCTTGAGGGAACGTACAGGGTTTACTGCCA
GAACCACGATGAAGCCATCTCCCTGCTGGAAATGTATGAGAAGGACGAGAAGACCCAGAAGCACCTTCAG
GACTACCTGGCAGATCTCAAGAGCCTGTACCACGAATGGGGATGCACCAATTACATCAACCTGGGCTCCT
TCCTCATCAAGCCCGTACAGAGAATAATGCGTTACCCGCTGCTGCTGATGGAGTTGCTGAATTCCACCCC
AGAATCCCACCCGGATAAAGTGCCTTTAACCAACGCGGTCCTCGCCGTCAAGGAGATCAATGTTAACATT
AATGAGTACAAGCGTCGGAAGGATCTGGTGCTTAAGTACCGCAAAGGGGATGAAGATAGCCTGATGGAAA
AGATCTCCAAGCTGAACATACACTCCATCATCAAGAAGTCCAGCCGCGTTAGCAGCCACCTCAAACACCT
CACTGGCTTCGCTCCGCAGCTAAAAGATGAAGTATTTGAAGAGACAGAAAAGAACTTCCGGATGCAGGAG
AGATTGATTAAATCTTTTATCCGAGACCTGTCCCTCTACCTCCAGCATATACGGGAATCTGCATGTGTGA
AGGTGGTGGCAGCCATGAGCATATGGGATCTGTGCATGGAGAGGGGACATCATGACCTGGAGCAGTTCGA
GAAGGTGCATCGCTACATCAGTGACCAGCTCTTCACACGGTTTAAAGAGAGGACCGAGCGGCTCGTCATC
AATCCCTTAAACCAGTTGTTGAACATGTTCACGGGGCCCTACAAGCTGGTGCAGAAGCGGTTCGACAAGC
TCCTGGACTTCTACAACTGCACTGAGCGAGCGGAGAAGCTGAAGGACAAGAAGACTCTGGAGGAGCTGCA
GTCAGCCCGAAACAACTACGAGGCCCTGAACTCGCAGCTGCTGGACGAGCTGCCCAAGTTCCAGCAGTAC
GCCCAGAGCCTCTTCACCAACTGCATCCACGGCTATGCCGAAGCCCACTGTGACTTCGTGCAGCAAGCCC
TGGAGCAGCTGCAGCCGCTGCTGTCGTTACTGAAAGCCACCGACCGAGAAGGCAACTTGATCGCCATCTT
CCTTGAGGAGCACAGCCGGGTGCTACAGCAGCTCCAGGTCTTCACATTCTTCCCCGAGTCCCTCCCAGCG
CCCAGGAAGCCCTTTGAGAGGAAAACCACAGACCGCCAGTCATCCCGGAAGACCCTTCTGGGCATGCCAA
GCTACATGCTGCAGTCGGAAGAGCTGCGGAGCTCCCTGCTGGCGAGGTACCCGCCGGAAAAGCTCTTCCA
CGTCCAGCGGAACTTCAACGCTGCGCAGGACTTGGATGTCTCCCTTTTGGAAGGCGACCTGGTGGGCGTG
ATCAAAAAGAAAGACCCCATGGGCAGCCAGAACCGCTGGCTCGTGGACAACGGAGTCACCAAAGGCTTTG
TCTACAGCTCCTTCCTGAAGCCTTACAATCCTCGCTGCAGCCATTCGGATGCCTCCGTGGCCAGCCACTC
CTCCACGGAGTCAGAGCACAGTGGCTCCTCCCCCGGGTGCCATCGACAGAACAGCCACAGTGCCTTGACC
TTCAACTCCAACAACATGACTGTGTCCTTCACCTCAGGACTTGCCCTAACGCAGCCTCAGGATGCATCTC
CACTGAAGGACTGTGCCCACGAAACTCTCGCTGTGTCCTGGAACACAGGGCATCCAGAGACTGGACCTTC
CACGTGCTCTTCCGACCCAGGCTTTTCCTGCCAGCGCAGGCTGGGGAACCCTGCAGATGGTGCCAGAGAC
ATCAGCCAACCTGCTTCAACCTTGAGGGGCTGCCAGCGAGGCTCCCCGCATTCAGAAGTGGTCGGTTACT
CTGTGCCAGGGCAAAATGACCAAGGCAGTGACTCTATAAAAGGCTCTGCAAGAGTCTGTCAGGCTCCAGA
AGACAGAGACAGAGGGGTCGGGAGCAGCGAGACAGAGGGCAACCAGGTCTATTTTGCCATTTATACTTTC
AAGGCACGAAACCCAAATGAACTGAGTGTGTTAGCCAATCAGAGACTCAGGATCCATGAGTTTAAAGACG
TCACAGGCAATACAGAGTGGTGGTTGGCTGAAGTTAACGGAAGGAAGGGCTACGTCCCATCCAACTATAT
CCGGAAAACCGAGTACACCTGA

Translation (823 aa):
MTLLSSQSSSLAAPFGSVSTENPEQRMLEKRAKVVAELLQTERDYIRDLEMCIERVMVPLQQAQVPNVDF
EGLFGNMQTVIKVSKQLLAALEISDAVGPVFLDHRDELEGTYRVYCQNHDEAISLLEMYEKDEKTQKHLQ
DYLADLKSLYHEWGCTNYINLGSFLIKPVQRIMRYPLLLMELLNSTPESHPDKVPLTNAVLAVKEINVNI
NEYKRRKDLVLKYRKGDEDSLMEKISKLNIHSIIKKSSRVSSHLKHLTGFAPQLKDEVFEETEKNFRMQE
RLIKSFIRDLSLYLQHIRESACVKVVAAMSIWDLCMERGHHDLEQFEKVHRYISDQLFTRFKERTERLVI
NPLNQLLNMFTGPYKLVQKRFDKLLDFYNCTERAEKLKDKKTLEELQSARNNYEALNSQLLDELPKFQQY
AQSLFTNCIHGYAEAHCDFVQQALEQLQPLLSLLKATDREGNLIAIFLEEHSRVLQQLQVFTFFPESLPA
PRKPFERKTTDRQSSRKTLLGMPSYMLQSEELRSSLLARYPPEKLFHVQRNFNAAQDLDVSLLEGDLVGV
IKKKDPMGSQNRWLVDNGVTKGFVYSSFLKPYNPRCSHSDASVASHSSTESEHSGSSPGCHRQNSHSALT
FNSNNMTVSFTSGLALTQPQDASPLKDCAHETLAVSWNTGHPETGPSTCSSDPGFSCQRRLGNPADGARD
ISQPASTLRGCQRGSPHSEVVGYSVPGQNDQGSDSIKGSARVCQAPEDRDRGVGSSETEGNQVYFAIYTF
KARNPNELSVLANQRLRIHEFKDVTGNTEWWLAEVNGRKGYVPSNYIRKTEYT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH