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Report for CCDS84707.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84707.1 Public Mus musculus 4 Ttpa 23 108 98 CCDS HistoryNCBI Gene:50500Re-query CCDS DB by CCDS ID:84707.1Re-query CCDS DB by GeneID:50500See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84707.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000121491.7 ENSMUSP00000113966.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121491.7Link to Ensembl Protein Viewer:ENSMUSP00000113966.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121491Re-query CCDS DB by Protein ID:ENSMUSP00000113966
Original member NCBI NM_001317723.1 NP_001304652.1 Updated not alive Link to Nucleotide Sequence:NM_001317723.1Link to Protein Sequence:NP_001304652.1Re-query CCDS DB by Nucleotide ID:NM_001317723Re-query CCDS DB by Protein ID:NP_001304652
Current member NCBI NM_001317723.2 NP_001304652.1 Accepted alive Link to Nucleotide Sequence:NM_001317723.2Link to Protein Sequence:NP_001304652.1Re-query CCDS DB by Nucleotide ID:NM_001317723Re-query CCDS DB by Protein ID:NP_001304652Link to BLAST:NP_001304652.1

Chromosomal Locations for CCDS 84707.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 20014634 20014784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 20021192 20021385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 20023785 20023895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 20028408 20028581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (630 nt):
ATGAAAAACTATTATAAATGGCGAGCAGAATGCCCAGAATTAAGTGCAGATCTACGCCCTAGAAGTATCC
TTGGACTTCTGAAAGCTGGCTACCATGGCGTGCTCAGGTCCCGGGATTCTACTGGCAGTAGAGTTCTCAT
TTACAGAATTGCATACTGGGACCCAAAAGTTTTTACAGCTTATGATGTATTTCGTGTAAGTCTGATCACA
TCAGAGCTCATTGTACAGGAGGTGGAAACTCAACGCAATGGAGTTAAAGCTATATTTGACCTGGAAGGCT
GGCAGGTTTCTCATGCTTTCCAAATTACCCCATCTGTAGCCAAGAAGATTGCTGCTGTACTTACAGATTC
CTTTCCACTGAAAGTTCGTGGGATCCATTTGATAAATGAGCCAGTCATTTTCCATGCTGTCTTCTCCATG
ATTAAACCATTTCTGACTGAAAAGATTAAGGACCGGATTCATCTGCACGGGAACAACTACAAATCAAGCA
TGCTTCAGCACTTCCCAGACATTCTTCCTCGGGAATATGGCGGTAAAGAGTTCTCCATGGAGGATATTTG
TCAGGAGTGGACAAATTTTATAATGAAGTCTGAAGATTATCTCAGCAGCATTTCTGAGACCATCCAATGA

Translation (209 aa):
MKNYYKWRAECPELSADLRPRSILGLLKAGYHGVLRSRDSTGSRVLIYRIAYWDPKVFTAYDVFRVSLIT
SELIVQEVETQRNGVKAIFDLEGWQVSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSM
IKPFLTEKIKDRIHLHGNNYKSSMLQHFPDILPREYGGKEFSMEDICQEWTNFIMKSEDYLSSISETIQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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