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Report for CCDS84973.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84973.1 Public Mus musculus 5 Alkbh4 23 108 98 CCDS HistoryNCBI Gene:72041Re-query CCDS DB by CCDS ID:84973.1Re-query CCDS DB by GeneID:72041See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84973.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041100.3 ENSMUSP00000040403.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041100.3Link to Ensembl Protein Viewer:ENSMUSP00000040403.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000041100Re-query CCDS DB by Protein ID:ENSMUSP00000040403
Original member Current member NCBI NM_001347492.1 NP_001334421.1 Accepted alive Link to Nucleotide Sequence:NM_001347492.1Link to Protein Sequence:NP_001334421.1Re-query CCDS DB by Nucleotide ID:NM_001347492Re-query CCDS DB by Protein ID:NP_001334421Link to BLAST:NP_001334421.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001334421.1 300 Q9D8F1-1 300 100% 0 0

Chromosomal Locations for CCDS 84973.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 136136178 136136294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136139338 136139535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136140179 136140766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (903 nt):
ATGGCGGCGGCGGCTGAAGTTTCTCTTTTGCAGGAGTGCGGCTGTAAGGGCATCCGGACCTGTCTTATCT
GCGAGAGACAACGCCACAGGGACCCGCCCTGGCAGATCTGCCTTCAGAAAAAATGCTGTTTCCTCTACTG
CCCAGACACAGGCTGGGCCGCAGGGGCCGAGGGCTCTGACTTGGAGGGTTGGGCATTCCCCTTCCCAGGA
GTGACACTGATACAGGACTTTGTGACCCCAGAGGAAGAAGCTGAGATGGTGCGTCTGATGGACTGCGACC
CCTGGAAGCTCTCACAGTCTGGGAGGAAGAAGCAGGACTATGGCCCTAAAGTTAATTTTCGGAAGCAGAA
GCTGAAGATGGCAGGCTTCCAGGGTCTCCCTGGCTTTAGCCAGAAGGTAGTCCAGAGAATGGGCCTTTAC
CCGGGGCTGGAGGACTTCCAGCCTGTGGAACAGTGCAATCTGGACTACAGCCCTGAGCGGGGCTCCGCCA
TCGACCCCCACTTGGACGACGCCTGGCTGTGGGGCGAGCGGCTGGTGAGCCTCAACCTCCTGTCAGCCAC
AGTGGTGTCCATGTCTCCAGAGGCCCCTGGCAGCCTGCTTCTCTGCTCAGCCCCCTCCGTCAGACCTGAT
GCTTTTGAGGACAGCCTTGTGGCTCCTAGCAGGTCTGTCCCCTGCCAGGAGGTGGAGGTGGCCATCACAG
TACCCCGCCGCTCCTTGCTGGTGCTTACAGGGGCCGCGAGGCACCAGTGGACACACGCCATCCACCGCAG
ACACATCAAGGCCCGCCGTGTGTGCGCCACCTTCAGGGAGCTGTCCAGTGAGTTCCTGCCTGGAGGGAAG
CAGCAAGAACTGGGCCAAGAACTGCTGCAGGCTGCACTCTCGTTCCAGGGGAGACCGGTGTGA

Translation (300 aa):
MAAAAEVSLLQECGCKGIRTCLICERQRHRDPPWQICLQKKCCFLYCPDTGWAAGAEGSDLEGWAFPFPG
VTLIQDFVTPEEEAEMVRLMDCDPWKLSQSGRKKQDYGPKVNFRKQKLKMAGFQGLPGFSQKVVQRMGLY
PGLEDFQPVEQCNLDYSPERGSAIDPHLDDAWLWGERLVSLNLLSATVVSMSPEAPGSLLLCSAPSVRPD
AFEDSLVAPSRSVPCQEVEVAITVPRRSLLVLTGAARHQWTHAIHRRHIKARRVCATFRELSSEFLPGGK
QQELGQELLQAALSFQGRPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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