NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS85010.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85010.1 Public Mus musculus 5 Hsph1 23 108 98 CCDS HistoryNCBI Gene:15505Re-query CCDS DB by CCDS ID:85010.1Re-query CCDS DB by GeneID:15505See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85010.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074846.13 ENSMUSP00000074392.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074846.13Link to Ensembl Protein Viewer:ENSMUSP00000074392.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000074846Re-query CCDS DB by Protein ID:ENSMUSP00000074392
Original member Current member NCBI NM_001347534.1 NP_001334463.1 Accepted alive Link to Nucleotide Sequence:NM_001347534.1Link to Protein Sequence:NP_001334463.1Re-query CCDS DB by Nucleotide ID:NM_001347534Re-query CCDS DB by Protein ID:NP_001334463Link to BLAST:NP_001334463.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001334463.1 814 Q61699-2 814 100% 0 0

Chromosomal Locations for CCDS 85010.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 149617507 149617710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149618387 149618548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149618746 149618865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149618961 149619068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149619877 149620002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149620546 149620683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149624969 149625177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149627255 149627388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149627536 149627642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149629201 149629429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149629787 149630031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149630339 149630472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149630760 149630859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149631387 149631509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149632034 149632174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149633830 149633887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149635970 149636076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2445 nt):
ATGTCGGTGGTTGGGCTAGACGTAGGCTCACAGAGCTGCTACATTGCGGTGGCGCGGGCCGGGGGCATCG
AGACCATCGCCAACGAGTTCAGCGACCGCTGCACCCCGTCAGTCATATCATTTGGATCAAAAAACAGAAC
AATTGGAGTTGCAGCCAAAAACCAGCAAATCACTCATGCAAACAATACGGTCTCTAGCTTTAAGAGATTT
CATGGCAGAGCATTCAATGACCCCTTCATTCAGAAGGAAAAGGAGAACCTGAGCTATGATTTGGTCCCAA
TGAAAAATGGTGGCGTGGGAATAAAGGTCATGTACATGGATGAAGAACATTTCTTCAGTGTGGAGCAGAT
AACAGCCATGCTGCTGACTAAGTTAAAGGAAACTGCAGAAAACAACCTCAAGAAGCCAGTGACAGACTGT
GTCATCTCAGTCCCATCCTTCTTCACAGATGCTGAGCGAAGGTCTGTGCTGGATGCTGCGCAGATTGTGG
GCTTGAACTGCTTGCGGCTCATGAATGACATGACGGCTGTTGCTTTGAATTATGGGATTTATAAGCAAGA
TCTCCCGAATGCCGAGGAGAAGCCACGGGTGGTGGTGTTTGTTGACATGGGACACTCATCTTTCCAAGTG
TCTGCCTGTGCTTTTAACAAAGGAAAACTGAAGGTTCTAGGCACAGCTTTTGATCCCTTCTTAGGAGGAA
AGAACTTTGATGAGAAGCTAGTAGAACATTTTTGTGCTGAATTTAAAACCAAGTACAAATTGGATGCAAA
ATCCAAAATTCGAGCCCTCCTTCGTCTCCATCAGGAGTGTGAAAAGTTGAAAAAGCTCATGAGTTCTAAC
AGCACGGACCTGCCGCTGAACATCGAGTGCTTTATGAATGACAAGGATGTCTCTGGGAAGATGAACAGGT
CACAGTTTGAAGAACTGTGTGCTGAGCTCCTGCAAAAAATAGAGGTCCCCCTTCACTCGTTGATGGCACA
GACTCAGCTCAAGGCTGAAGATGTGAGTGCCATTGAGATAGTGGGAGGTGCCACAAGAATCCCAGCTGTG
AAAGAAAGAATTGCCAAGTTCTTTGGAAAAGATGTCAGCACCACGCTCAATGCAGACGAAGCTGTGGCCA
GAGGCTGTGCACTGCAGTGTGCAATTCTTTCTCCGGCATTTAAAGTTAGAGAGTTCTCTGTCACCGATGC
AGTTCCTTTTCCAATATCTCTGGTCTGGAACCACGACTCGGAAGAAACGGAAGGTGTGCACGAGGTGTTC
AGTCGGAACCATGCTGCTCCTTTCTCCAAAGTGCTCACCTTCCTGAGAAGGGGGCCCTTTGAGCTAGAAG
CTTTCTATTCTGACCCTCAAGGAGTTCCATATCCAGAAGCAAAAATAGGCCGTTTTGTTGTTCAGAATGT
TTCTGCACAGAAAGATGGAGAGAAGTCGAGAGTGAAGGTCAAAGTGCGTGTGAACACACATGGCATCTTC
ACCATCTCCACGGCTTCCATGGTGGAGAAGGTCCCGACCGAGGAAGAGGATGGCTCCTCTCTCGAGGCAG
ACATGGAATGTCCAAACCAGAGGCCAACAGAAAGCTCGGATGTGGATGCAAATGAAAAGAAAGTTGATCA
GCCTCCAGAAGCCAAGAAACCTAAAATAAAGGTGGTAAATGTTGAGCTGCCTGTAGAAGCCAACTTGGTA
TGGCAGTTAGGGAGAGACCTTCTTAACATGTATATTGAGACAGAGGGCAAGATGATCATGCAAGACAAGC
TGGAGAAGGAGCGGAACGACGCCAAGAACGCCGTGGAGGAGTGTGTATATGAGTTCAGGGACAAGCTATG
TGGACCATATGAGAAATTCATATGTGAGCAGGAACATGAGAAGTTCTTGAGGCTTCTAACAGAGACGGAA
GACTGGCTGTATGAGGAAGGGGAGGACCAGGCTAAGCAGGCATACATTGACAAGTTGGAAGAGCTGATGA
AAATGGGCACTCCTGTTAAAGTCAGATTTCAAGAAGCTGAGGAACGACCGAAAGTGTTGGAGGAGCTGGG
GCAGCGCCTGCAGCACTATGCCAAGATTGCAGCGGACTTCAGAGGCAAGGATGAGAAATACAACCACATT
GATGAATCAGAAATGAAGAAGGTTGAGAAGTCTGTTAATGAGGTGATGGAGTGGATGAATAATGTCATGA
ATGCTCAGGCTAAAAGAAGTCTTGATCAAGACCCTGTTGTTCGAACTCATGAAATCAGAGCGAAGGTCAA
GGAATTGAACAATGTTTGTGAACCTGTTGTAACTCAACCCAAACCAAAAATCGAGTCACCTAAACTGGAG
AGAACTCCAAATGGCCCAAATATTGACAAGAAAGAAGATTTAGAAGGCAAAAATAATCTTGGTGCTGAAG
CTCCGCATCAGAATGGTGAATGCCACCCTAATGAGAAGGGCTCTGTCAACATGGACCTGGACTAG

Translation (814 aa):
MSVVGLDVGSQSCYIAVARAGGIETIANEFSDRCTPSVISFGSKNRTIGVAAKNQQITHANNTVSSFKRF
HGRAFNDPFIQKEKENLSYDLVPMKNGGVGIKVMYMDEEHFFSVEQITAMLLTKLKETAENNLKKPVTDC
VISVPSFFTDAERRSVLDAAQIVGLNCLRLMNDMTAVALNYGIYKQDLPNAEEKPRVVVFVDMGHSSFQV
SACAFNKGKLKVLGTAFDPFLGGKNFDEKLVEHFCAEFKTKYKLDAKSKIRALLRLHQECEKLKKLMSSN
STDLPLNIECFMNDKDVSGKMNRSQFEELCAELLQKIEVPLHSLMAQTQLKAEDVSAIEIVGGATRIPAV
KERIAKFFGKDVSTTLNADEAVARGCALQCAILSPAFKVREFSVTDAVPFPISLVWNHDSEETEGVHEVF
SRNHAAPFSKVLTFLRRGPFELEAFYSDPQGVPYPEAKIGRFVVQNVSAQKDGEKSRVKVKVRVNTHGIF
TISTASMVEKVPTEEEDGSSLEADMECPNQRPTESSDVDANEKKVDQPPEAKKPKIKVVNVELPVEANLV
WQLGRDLLNMYIETEGKMIMQDKLEKERNDAKNAVEECVYEFRDKLCGPYEKFICEQEHEKFLRLLTETE
DWLYEEGEDQAKQAYIDKLEELMKMGTPVKVRFQEAEERPKVLEELGQRLQHYAKIAADFRGKDEKYNHI
DESEMKKVEKSVNEVMEWMNNVMNAQAKRSLDQDPVVRTHEIRAKVKELNNVCEPVVTQPKPKIESPKLE
RTPNGPNIDKKEDLEGKNNLGAEAPHQNGECHPNEKGSVNMDLD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH