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Report for CCDS85072.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85072.1 Under review, update Mus musculus 6 Nagk 23 108 98 CCDS HistoryNCBI Gene:56174Re-query CCDS DB by CCDS ID:85072.1Re-query CCDS DB by GeneID:56174See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85072.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113851.7 ENSMUSP00000109482.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113851.7Link to Ensembl Protein Viewer:ENSMUSP00000109482.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113851Re-query CCDS DB by Protein ID:ENSMUSP00000109482
Original member NCBI NM_001347315.1 NP_001334244.1 Updated not alive Link to Nucleotide Sequence:NM_001347315.1Link to Protein Sequence:NP_001334244.1Re-query CCDS DB by Nucleotide ID:NM_001347315Re-query CCDS DB by Protein ID:NP_001334244
Current member NCBI NM_001347315.2 NP_001334244.2 Pending alive Link to Nucleotide Sequence:NM_001347315.2Link to Protein Sequence:NP_001334244.2Re-query CCDS DB by Nucleotide ID:NM_001347315Re-query CCDS DB by Protein ID:NP_001334244Link to BLAST:NP_001334244.2

Chromosomal Locations for CCDS 85072.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 83795166 83795248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83796907 83796991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83797177 83797275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83797956 83798097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83798544 83798654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83799271 83799383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83800271 83800358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83801091 83801188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83801498 83801576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83802268 83802455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1086 nt):
ATGACAAGGGGCGGTGCCCGTGTGGGCGGGAGCGAAGTCACGGCTAGGGTCGAGGTTGCTACGGCGGACC
AGCGGTGGCAACGGGGAGGCACACGGTCCAAAGTCCTTTTACTTTCTGAGGATGGGCAGATCCTGGCAGA
AGCAGATGGACTGAGCACAAACCACTGGCTGATTGGCACAGACCAGTGTGTGGAGAGGATCAATGAGATG
GTGGACAGGGCCAAACAGAAGGCTGGAGTGGATCCTCTGGTGCCCCTTCGAAGCCTGGGCCTGTCCCTGA
GTGGTGGGGAGCAGGAGGATGCAGTGAGGCTCCTGATTGAGGAGTTGAGGCACCGCTTTCCCAACCTGAG
TGAAAACTACTTAATCACCACGGATGCAGCAGGTTCCATCGCCACAGCCACACCGGACGGTGGGATTGTG
CTCATCTCTGGAACAGGCTCCAACTGTAGGCTTATCAACCCTGATGGCTCCGAGAGTGGCTGTGGAGGCT
GGGGCCACATGATGGGAGACGAGGGCTCAGCCTACTGGATTGCACACCAAGCTGTGAAAATTGTGTTTGA
TTCCATCGACAACCTGGAGGCAGCTCCTCATGATATTGGCCATGTCAAGCAGGCCATGTTCGACTATTTC
CAGGTGCCAGATCGGCTTGGAATCCTCACCCATTTGTATAGGGACTTTGATAAATGCAAGTTTGCTGGAT
TTTGCCAGAAAATTGCAGAAGGTGCACATCAGGGAGACCCTCTTTCCAGGTACATCTTCAGGAAGGCTGG
AGAGATGCTGGGCAGACATGTTGTGGCAGTATTGCCAGAGATTGACCCGGTTTTGTTCCAAGGGGAGCTT
GGCCTCCCCATTCTGTGTGTGGGCTCAGTGTGGAAGAGCTGGGAGCTCCTGAAGGAAGGCTTTCTCCTGG
CGCTGACGCTGGGCCGAGAGCAGCAGGCACAGAACTCCTTCTCCAGCTTCACCCTGATGAAGTTGCGGCA
TTCTTCTGCATTGGGGGGTGCCAGCCTGGGGGCCAGGCACATTGGATACCACCTTCCCATGGACTACAGT
ATCAATGCCATTGCCTTCTATTCCTATACCTTCTAG

Translation (361 aa):
MTRGGARVGGSEVTARVEVATADQRWQRGGTRSKVLLLSEDGQILAEADGLSTNHWLIGTDQCVERINEM
VDRAKQKAGVDPLVPLRSLGLSLSGGEQEDAVRLLIEELRHRFPNLSENYLITTDAAGSIATATPDGGIV
LISGTGSNCRLINPDGSESGCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGHVKQAMFDYF
QVPDRLGILTHLYRDFDKCKFAGFCQKIAEGAHQGDPLSRYIFRKAGEMLGRHVVAVLPEIDPVLFQGEL
GLPILCVGSVWKSWELLKEGFLLALTLGREQQAQNSFSSFTLMKLRHSSALGGASLGARHIGYHLPMDYS
INAIAFYSYTF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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