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Report for CCDS85083.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85083.1 Public Mus musculus 6 Rab11fip5 23 108 98 CCDS HistoryNCBI Gene:52055Re-query CCDS DB by CCDS ID:85083.1Re-query CCDS DB by GeneID:52055See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85083.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000204087.1 ENSMUSP00000145402.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000204087.1Link to Ensembl Protein Viewer:ENSMUSP00000145402.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000204087Re-query CCDS DB by Protein ID:ENSMUSP00000145402
Original member Current member NCBI NM_001003955.2 NP_001003955.1 Accepted alive Link to Nucleotide Sequence:NM_001003955.2Link to Protein Sequence:NP_001003955.1Re-query CCDS DB by Nucleotide ID:NM_001003955Re-query CCDS DB by Protein ID:NP_001003955Link to BLAST:NP_001003955.1

Chromosomal Locations for CCDS 85083.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 85337023 85337226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85337481 85337670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85340343 85342361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85347780 85348455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85348555 85348991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85374098 85374528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3957 nt):
ATGGCTCTGGTGCGGGACCCTGAGCCGGCGGCCGGATCCTCCCGCTGGCTGCCCACGCATGTCCAGGTGA
CCGTGCTGCGGGCCAGCGGGTTGAGGGGCAAGAGCTCGGGCGCCGGCAGCACCAGCGACGCGTACACGGT
GATCCAGGTGGGCCGAGAGAAGTACAGCACCTCGGTAGTGGAGAAGACGCAAGGCTGCCCGGAATGGTGC
GAAGAGTGTTCGTTCGAGCTACCGCCTGGAGCCCTGGACGGCCTGCTGCGGGCACAGGAGGCAGATGCGG
GCCCTGCGCCCTGGGCCTCCGGCCCCAACGCCGCCTGCGAGCTCGTGCTCACCACCATGCATCGCTCACT
CATCGGCGTGGACAAGTTTCTGGGCCGGGCAACCGTAGCTCTGGACGAGGTCTTCCGCGCAGGCCGCGCC
CAGCACACGCAGTGGTACAGGCTTCACTCCAAGCCAGGCAAGAAGGAGAAGGAGCGCGGTGAGATCCAGG
TGACCATCCAGTTCACACGGAACAACCTGAGCGCCAGCATGTTTGATCTTTCCATGAAGGACAAGCCACG
GTCTCCCTTCAGCAAGCTCAAGGACAGAGTGAAGGGCAAGAAGAAGTATGATCTCGAATCTGCCTCAGCG
ATTCTTCCAAGCAGCGCCCTGGAGGATCCTGAGTTAGGCAGCCTGGGCAAGATGGGCAAAGCCAAAGGTT
TCTTCCTCCGAAACAAGCTACGCAAGTCCTCGCTCACACAGTCTAACACCTCTCTGGGCTCTGACAGCAC
CTTGTCTTCCACTAGTGGCAGCCTGGTCTACCAGGGACCCGGGGCGGAGCTCCTCACCCGCTCACCAAGC
CACAGCAGCTGGCTGTCCACTGAAGGGGGTAGGGACTCTATACAGTCCCCCAAGCTGCTCACCCACAAGA
GGACATACAGTGATGAGGCCAGCCAGCTTCGAGCAGCTCCTCCCCGGGCCCTTCTTGAGCTCCAAGGCCA
CCTTGATGGTGCCTCCCGCTCTTCCCTCTGCGTCAATGGGAGCCATGTGTACAATGAGGAACCTCAGCCC
CCCTTACGGCACCGCAGCTCCATCTCAGGCCCCTTTCCACCTTCAAGCTCCTTACACAGTGTCCCACCTC
GGTCCTCTGAGGAGGGGTCTCGGTCCTCGGATGATTCTTGGGGCAGAGGCAGCCATGGCACCAGCAGCTC
AGAGGCAGTGCCTGGACAGGAGGAGCTGAGCAAGCAGGCCAAAGGGGCCAGTTGCTCTGGAGAGGAGGAG
GGGGCCCGGTTACCCGAGGGGAAGCCAGTCCAGGTTGCCACCCCCATGGTGGCCTCCTCTGAGGCTGTGG
CAGCAGAAAAGGATCGGAAGCCCCGAATGGGGCTCTTCCATCACCACCACCACCAAGGGCTGAGTCGGAG
TGAGCAGGGGCGCCGTGGCTCAGTCGGGGAGAAGGGGAGTCCGTCCCTGGGAGCCTCCCCCCACCATTCA
TCCACCGGGGAGGAAAAGGCCAAGAGTAGCTGGTTTGGCCTGAGAGAATCCAAGGAGCCAACTCAGAAGC
CCAGCCTGGACGTGTCTCCTCAGGTAGAATCTGACCCAGCTGCTCCTCACCCCTGCTCCCCCCAGGCTCT
GGCCCCCCCTCCTGCTCCCGCTGCTGCTCCCATGCTAAGCACTAACCTTTTTGCAGTCACCTCCCCTGCC
GCTGCCACTGCCGCTGCTGCCACCATTGTCCTTGAAGCCACCCCATCCGGATTCTTGGGGGTCACCAACC
CGTTCCTCAACTCCTTGCAGAGCAACCCCTTCTTCGAGGATCTCAAAGCCGACATAGCACTAAATTCTCC
TTCACCTGCTCCCTCTCTCCCCAGTGCCTCGAGGGCCAGCCTGGCCCCCCTGGCCTCCCCTGGGAAAGCC
CTGCCTGAGTGGGACGACACCTTCAACATCTTTGCTGCTGGCAGGCTGCAGCAAGAGGCCGGGAGTGGGA
TCCTGGCCCCTGCAGGAATGGGGCTGGAGGAGGATGGGCTGCAAGACCCAGGCCCTAGGACCATGGCAGT
GAAAGCGACAGAGCCCCAGGGAGAGCCTGGGAGAGGAAGAAGAGGAAGCAACATATGGCTAGAGCCCAAG
GTTTCTGTGGACTCAGAACTGGACCAGCCAAGCACAAGTATGTCTGACCCAGGACCCTTTGGGTCTTCAG
GGAGTGGTCCATCCTCCAGGGCATCCCAGTTGCACCTGCAAGCCTCAGCCTCAACACCAGACCGGGAGCT
TCCTGCCTCAGAAGGGGGAGCGGGGCAGAGTCCAGCAGATAGTGGGGCATCTCTGTTCAGCTCCCCAGAA
GTTCTCAGTGTGTGGGAGAGATTTCCTGGTTCAGATGACACTCCTGGAGGCCGAGATGAGGAGGCCCCCC
AAGATGGAAGCCAGCTTTTCCAGGAGCTGAACACAGTGGAGGATTCCTGGCCTTGGGATGTGATCACCAT
TTCTCCTACAGCAGAGGTCGCTTCACCTGTCATGAAGGGAGAATCCGACGGGGTACTTTCTTCCCAGGTG
CAGCCTGAATCTCCAGATACTGTGCCCCCCATGGGGAGCGAAGGGCTCCCAGCATTGCTGGAGCCAGAGC
CAGAGCAGGGATTGGATGAGGGGCCATGGCTTGGCCCTCCACCTCCCAAGCCACCACGCCTCTTCACACC
CACCAATTCTCAGGTGGAGGAGGAGGACAAAGAGGAGGAAGAGAATGCTACAGGGCGGCAAAGTAGCAGG
GGACCAGGGGTAGAAAAAGACAGCACCCCCCGTGCATTGGCCATTGGTCCCCAAGAGTCTAAGGAGGAAT
GGGTAAATCCAGAGTTGGAGAAATTGCATAGACTGCCCTCTGGAACCCTGATAGGTAAGCCAGAACTTGA
AGACCCAGTAGGAGAAACTAGTAGCCCTGTGTTTGGGGACTGTCCACCTAGGCCCACCAGCTGCCCTGAG
GGGCCTGTCCCCAGACCCCATAACTCAATCAGCTCCACTCTGCTGAGTCAGAAGGTCTTGGGGACCTCAG
AGACAGAGGAGGGCTTTGAAACCAAGAGCCAGGAGCTAGCCAAAGAGGGGTTTGGGCCTCTCTCAGTCCC
CTCCCAGCAGTCAAGTATGCGGGCCAAGGAAGAGGAGGAGGGGGAGGAAGAGGAGGAAGAGGGAGAGGAG
GAGGAGGCATTGGAGACCTCCAATTCCTTCTTATGTCAGGAAAGCCAAGATCCCCCCAGCTTCCCATCCA
TATCACCACCAGGGTCAAGGGGATCCTCTATTCACTCTGGTCCAGAAGAGTTGCCCACACCCCCAGAACC
TGCCTTCCCACCTCCCCCTCTCCCACCCTGGGCCAGCCACCGCCACGGCGTGCCAGGCCCTCCATGCCCT
CCCCTGCCTATAGCCTGGCCCTTGACCTCTTCTTCCTCACCTCCCGAGGAGTCAGCTTCACCCCTCGGTC
CCCCTGAGCTCTCCCCCACTGGGGGCTCCCCTACATCATATGGGGAAGACCATGCTGCAGCCACCCCAGC
CTCCCCGCTTGTGCTTCTGCCCCTGGAGACACGACCAGCTGAGGAGCCCCAGCCCAGCGGCAGTCCCCAC
CCTGTGAAACCCCTTACTGCTGCCCCTGTGGAGGCTAGCCCCGACAGGAAACAGCCCCGTACCAGCCTGA
GCACAGCCCTGAGTAGCGGACTGGAGAGGCTCAAAACTGTCACATCTGGTGGCATCCAGTCTGTGCTTCC
AGCGTCCCAGCTTGGCTCAAGTGTGGACACCAAGAGGCCAAAGGATTCTGCTGTGCTGGACCAGTCGGCC
AAGTACTATCACCTGACTCATGATGAGCTCATTGGCCTGCTCCTGCAGCGTGAGCGTGAGCTGAGCCAGA
GAGACGAGCATGTGCAAGAACTGGAGAGCTACATTGACCGGCTGCTGGTGCGGATCATGGAGACCTCGCC
CACACTGCTGCAAATCTCCCCTGGCCCCCCCAAGTAG

Translation (1318 aa):
MALVRDPEPAAGSSRWLPTHVQVTVLRASGLRGKSSGAGSTSDAYTVIQVGREKYSTSVVEKTQGCPEWC
EECSFELPPGALDGLLRAQEADAGPAPWASGPNAACELVLTTMHRSLIGVDKFLGRATVALDEVFRAGRA
QHTQWYRLHSKPGKKEKERGEIQVTIQFTRNNLSASMFDLSMKDKPRSPFSKLKDRVKGKKKYDLESASA
ILPSSALEDPELGSLGKMGKAKGFFLRNKLRKSSLTQSNTSLGSDSTLSSTSGSLVYQGPGAELLTRSPS
HSSWLSTEGGRDSIQSPKLLTHKRTYSDEASQLRAAPPRALLELQGHLDGASRSSLCVNGSHVYNEEPQP
PLRHRSSISGPFPPSSSLHSVPPRSSEEGSRSSDDSWGRGSHGTSSSEAVPGQEELSKQAKGASCSGEEE
GARLPEGKPVQVATPMVASSEAVAAEKDRKPRMGLFHHHHHQGLSRSEQGRRGSVGEKGSPSLGASPHHS
STGEEKAKSSWFGLRESKEPTQKPSLDVSPQVESDPAAPHPCSPQALAPPPAPAAAPMLSTNLFAVTSPA
AATAAAATIVLEATPSGFLGVTNPFLNSLQSNPFFEDLKADIALNSPSPAPSLPSASRASLAPLASPGKA
LPEWDDTFNIFAAGRLQQEAGSGILAPAGMGLEEDGLQDPGPRTMAVKATEPQGEPGRGRRGSNIWLEPK
VSVDSELDQPSTSMSDPGPFGSSGSGPSSRASQLHLQASASTPDRELPASEGGAGQSPADSGASLFSSPE
VLSVWERFPGSDDTPGGRDEEAPQDGSQLFQELNTVEDSWPWDVITISPTAEVASPVMKGESDGVLSSQV
QPESPDTVPPMGSEGLPALLEPEPEQGLDEGPWLGPPPPKPPRLFTPTNSQVEEEDKEEEENATGRQSSR
GPGVEKDSTPRALAIGPQESKEEWVNPELEKLHRLPSGTLIGKPELEDPVGETSSPVFGDCPPRPTSCPE
GPVPRPHNSISSTLLSQKVLGTSETEEGFETKSQELAKEGFGPLSVPSQQSSMRAKEEEEGEEEEEEGEE
EEALETSNSFLCQESQDPPSFPSISPPGSRGSSIHSGPEELPTPPEPAFPPPPLPPWASHRHGVPGPPCP
PLPIAWPLTSSSSPPEESASPLGPPELSPTGGSPTSYGEDHAAATPASPLVLLPLETRPAEEPQPSGSPH
PVKPLTAAPVEASPDRKQPRTSLSTALSSGLERLKTVTSGGIQSVLPASQLGSSVDTKRPKDSAVLDQSA
KYYHLTHDELIGLLLQRERELSQRDEHVQELESYIDRLLVRIMETSPTLLQISPGPPK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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