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Report for CCDS85093.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85093.1 Public Mus musculus 6 Podxl2 23 108 98 CCDS HistoryNCBI Gene:319655Re-query CCDS DB by CCDS ID:85093.1Re-query CCDS DB by GeneID:319655See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85093.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000145944.2 ENSMUSP00000117954.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000145944.2Link to Ensembl Protein Viewer:ENSMUSP00000117954.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000145944Re-query CCDS DB by Protein ID:ENSMUSP00000117954
Original member NCBI NM_001347327.1 NP_001334256.1 Updated not alive Link to Nucleotide Sequence:NM_001347327.1Link to Protein Sequence:NP_001334256.1Re-query CCDS DB by Nucleotide ID:NM_001347327Re-query CCDS DB by Protein ID:NP_001334256
Current member NCBI NM_001347327.2 NP_001334256.1 Accepted alive Link to Nucleotide Sequence:NM_001347327.2Link to Protein Sequence:NP_001334256.1Re-query CCDS DB by Nucleotide ID:NM_001347327Re-query CCDS DB by Protein ID:NP_001334256Link to BLAST:NP_001334256.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001334256.1 603 Q8CAE9-1 603 99.8342% 0 1

Chromosomal Locations for CCDS 85093.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 88842767 88842976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88843507 88843686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88845066 88845127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88845533 88845689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88848735 88848809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88849195 88849988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88865017 88865289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88874919 88874979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1812 nt):
ATGGCCCGGCCGCTGCGGGCCGCCCGACTGCCGCCGCCGCTGCTGTTGCTGCTGGCCGCCGGAGCTTCCC
TGGGTGCCTATGCAGTGGGCGTGGATGAGCCTGGCCCCGAGGGCCTCACCTCCACGTCCCTGCTGGACCT
CTTGTTGCCCACTGACTTTGAGCCACTGGACTCAGAGGAACCCAGCGAGGCCATGGGTCTAGACGCCGGC
CTAGCCCCAGGCTCGGGCTTCCCCAGTGAGGACAGCGAGGAGTCCCGGCTCCTGCAGCCGCCACAGTACT
TCTGGGAAGAAGAGGAACTAAACGGCTCCAGCCTGGACCTGGGTCCCACTGCAGACTACGTCTTCCCAGA
CCTGACTGAGAAGGTGGCGTCCATGGAAGACCCAGGCCAGGCTCCGGACCTGCCAAACCTCCCCTCCATC
CTGCCCAAGATGGATCTTGCTGAGCCTCCCTGGCATATGCCTCTGCAGGAGGAGGAAGAGGAGGAGGAAG
AGGAGGAGGAGGAAAGGGAAGAAGAGGAGAGGGAGAAGGAAGCAGAGGAGGAGGAGGAAGAGGAAGAGCT
GCTCCCTGTGAGCGGGTCCCCAGGAGCCACCGCACAGGCCCATGCCCCTTCACCTAGCACCAGCAGCAGC
ACCAGCAGCCAGAGTCCTGGGGCCACCCGGCACAGGCAGGAGGATTCTGGAGACCAGGCCACATCAGGCA
TGGAAGTGGAGAGCAGTGTGAAACCCACCTTGTCAGTGCCCTCAGTCACCCCAAGTACAGTGGCCCCGGG
GGTTCAGAACTATAGCCAGGAGTCTGGGGGCACTGAGTGGCCAACTGGGGGGCTGGGGGTCCAGTCTGAG
GTTCCCCAGGGAGCTGGTGAGGGGGCCACAGTGGGAGCAGCTGACTTCGATGGCCAGCAGGGGGCACTGC
CGTCCTCTTCACTCCCACAAACAGTGCCTCCAAGTGGGACTGAGGTCCCCAGTGAGGGTCCCCTTTACCC
CAGAATCCCAGACTCTCTCCCACCTGGACCCCAAGACACAGAGTCAACCCCTTCCTCTGCTACCTGGGGA
CAAGAAGGTCTCAGTGAGCAGCCCCTGGAGGGTCAGGCAGCTGAAGCTCACTCACTAACACCGTGGGACT
CTACTCAGGTGATCTGCAAGGATTGGAGCAACCTGGCCGGGAAGAGCTACATCATCCTGAACATGACAGA
GAACATAGACTGTGAAGTATTTCGGCGGCACCGGGGACTACGGCTCCTAGCTCTGGTGGAGGAGGTACTG
CCACGCCACCGCAGTGGCCATCGTGGAGACTGGCATATTTCTCTGAGCAAGCCCAGTGAGAAAGAGCAAC
ACCTGCTGATGACCCTTGTAGGAGAACAGGGCGTGGTACCCACTCAAGATGTCCTTTCCATGCTCAGTGG
CATCCGCAGGAGTCTGGAGGAGATTGGCATCCAGAACTACTCCACCACCAGCAGCTGCCAGGCACGAGCC
ACCCAGGTGCGCAGTGACTACGGGACGCTCTTTGTAGTGCTGGTGATCATTGGTGTCATCTGCTTCATCA
TCATTGTGCTTGGCCTACTCTACAATTGTTGGCAGCGCCGGATGCCCAAGCTCAAACACGTGTCGCACGG
TGAGGAGCTGCGCTTCGTGGAGAACGGCTGCCACGACAATCCCACGCTGGACGTGGCCAGCGACAGCCAG
TCGGAGATGCAGGAGAAGCAGCCCAGCCTGAACGGTGGGGCCATCAACGGCCCGAGCAGCTGGAGCGCGC
TCATGGGCAGCAAACGCGACCCTGAGGACTCGGACGTGTTCGAGGAGGACACTCACCTGTGA

Translation (603 aa):
MARPLRAARLPPPLLLLLAAGASLGAYAVGVDEPGPEGLTSTSLLDLLLPTDFEPLDSEEPSEAMGLDAG
LAPGSGFPSEDSEESRLLQPPQYFWEEEELNGSSLDLGPTADYVFPDLTEKVASMEDPGQAPDLPNLPSI
LPKMDLAEPPWHMPLQEEEEEEEEEEEEREEEEREKEAEEEEEEEELLPVSGSPGATAQAHAPSPSTSSS
TSSQSPGATRHRQEDSGDQATSGMEVESSVKPTLSVPSVTPSTVAPGVQNYSQESGGTEWPTGGLGVQSE
VPQGAGEGATVGAADFDGQQGALPSSSLPQTVPPSGTEVPSEGPLYPRIPDSLPPGPQDTESTPSSATWG
QEGLSEQPLEGQAAEAHSLTPWDSTQVICKDWSNLAGKSYIILNMTENIDCEVFRRHRGLRLLALVEEVL
PRHRSGHRGDWHISLSKPSEKEQHLLMTLVGEQGVVPTQDVLSMLSGIRRSLEEIGIQNYSTTSSCQARA
TQVRSDYGTLFVVLVIIGVICFIIIVLGLLYNCWQRRMPKLKHVSHGEELRFVENGCHDNPTLDVASDSQ
SEMQEKQPSLNGGAINGPSSWSALMGSKRDPEDSDVFEEDTHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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