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Report for CCDS85181.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85181.1 Public Mus musculus 6 Spx 23 108 98 CCDS HistoryNCBI Gene:319552Re-query CCDS DB by CCDS ID:85181.1Re-query CCDS DB by GeneID:319552See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 85181.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000126521.8 ENSMUSP00000118062.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000126521.8Link to Ensembl Protein Viewer:ENSMUSP00000118062.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000126521Re-query CCDS DB by Protein ID:ENSMUSP00000118062
Original member Current member NCBI NM_001242345.1 NP_001229274.1 Accepted alive Link to Nucleotide Sequence:NM_001242345.1Link to Protein Sequence:NP_001229274.1Re-query CCDS DB by Nucleotide ID:NM_001242345Re-query CCDS DB by Protein ID:NP_001229274Link to BLAST:NP_001229274.1

Chromosomal Locations for CCDS 85181.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 142413441 142413446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 142413833 142413913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 142414021 142414078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 142414769 142414831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 142416385 142416474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 142418513 142418571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (357 nt):
ATGAAGGGGCCCAGCGTCCTGGCAGTGACAGCCGTGGTCCTTCTCCTGGTGCTGTCTGCGCTGGAAAACT
CCAGCGGTGCTCCACAGCGACTCTCTGAGAAGAGGAACTGGACTCCCCAAGCTATGCTCTATCTGAAGGG
TGCACAGGGCCGCCGCTTCCTCTCCGACCAGAGCCGTAGGAAGGAGCTTGCAGACCGGCCGCCTCCAGAA
AGACGAAACCCAGATCTTGAACTGCTGACTCTCCCAGAGGCTGCAGCCCTGTTTCTGGCTTCCTTGGAAA
AATCACAAAAAGGTGCAGATGAAGGAGGGAATTTTGATAAAAGCGAACTCTTGGAAGACAGACTCTTCAA
CTGGTGA

Translation (118 aa):
MKGPSVLAVTAVVLLLVLSALENSSGAPQRLSEKRNWTPQAMLYLKGAQGRRFLSDQSRRKELADRPPPE
RRNPDLELLTLPEAAALFLASLEKSQKGADEGGNFDKSELLEDRLFNW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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