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Report for CCDS85291.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85291.1 Public Mus musculus 7 Med25 23 108 98 CCDS HistoryNCBI Gene:75613Re-query CCDS DB by CCDS ID:85291.1Re-query CCDS DB by GeneID:75613See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85291.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000207278.1 ENSMUSP00000146595.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000207278.1Link to Ensembl Protein Viewer:ENSMUSP00000146595.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000207278Re-query CCDS DB by Protein ID:ENSMUSP00000146595
Original member NCBI NM_001331208.1 NP_001318137.1 Updated not alive Link to Nucleotide Sequence:NM_001331208.1Link to Protein Sequence:NP_001318137.1Re-query CCDS DB by Nucleotide ID:NM_001331208Re-query CCDS DB by Protein ID:NP_001318137
Current member NCBI NM_001331208.2 NP_001318137.1 Accepted alive Link to Nucleotide Sequence:NM_001331208.2Link to Protein Sequence:NP_001318137.1Re-query CCDS DB by Nucleotide ID:NM_001331208Re-query CCDS DB by Protein ID:NP_001318137Link to BLAST:NP_001318137.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001318137.1 618 Q8VCB2-2 618 100% 0 0

Chromosomal Locations for CCDS 85291.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 44879417 44879514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44879927 44880104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44880252 44880470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44880923 44881111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44882759 44882866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44882968 44883025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44883099 44883184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44884119 44884247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44884563 44884756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44884833 44884920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44885080 44885210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44885339 44885501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44885784 44885904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44886172 44886266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1857 nt):
ATGGGCGGTGGTGGCGAGAGCTGTAGTCTCATCGCTGAAGGTCTGAGCACTGCCCTGCAGCTGTTCGATG
ACTTTAAGAAGATGCGTGAACAGATTGGCCAGACCCACCGAGTCTGTCTCCTCATCTGCAACTCACCCCC
GTACCTCCTGCCCGCCGTGGAGAGCACCACCTACTCAGGCTGCACTACCGAGAGCCTGGTGCAGAAAATA
GGAGAGCGAGGCATCCACTTCTCCATCGTTTCTCCGAGAAAGCTGCCAGCCCTCCGGCTTCTGTTTGAGA
AGGCGGCTCCTCCTGCCCTACTGGAGCCTTTGCAGCAACCAGCAGACGTCAGCCAGGACCCCAGGCACAT
GGTGCTTGTGCGTGGGCTCGTGCTGCCTGTTGGTGGCAGCTCGACCTCAGGCTCTCTGCAGACCAAGCAA
GCAGTCCCCTTGCCACCAGCTCCAGCTTCTGCTGCCACGCTGTCAGCAGCGCCCCCGCAGGCTCTGCCCC
CTGTCCCACCACAGTACCAGGTTCCTGGGAACCTAAGTGCTGCTCAGGTGGCTGCGCAGAATGCTGTGGA
GGCTGCCAAGAGCCAGAAGGCCGGGCTGGGCCCACGCTTCTCACCCATCAACCCTCTCCAGCAAGCTGCT
CCAGGAGTGGGGCCCCCCTTCAGCCAGGCCCCAGCACCCCCATTGGCTCCTGTGCCCCCTGGAGCTCCAA
AGCCACCTCCTGCCTCACAGCCTAGCCTAGTCTCCACCGTGGCCCCCGGACCAGTCCTGGCAGCTCCTGC
GCAGCCTGGGGCGCCGTCTCTGGCAGGCACTGTAACCCCAGGTGGGGTCAATGGTCCTTCAGCAGCCCAG
CTTGGGGGTCCTGCACTTGGTGGGCAGCAGTCAGTATCCAACAAGCTCCTAGCCTGGAGTGGAGTCCTCG
AGTGGCAGGAGAAACCCAAGCCTGCATCTGTGGATGCCAACACCAAGCTGACGAGGTCTCTGCCTTGCCA
GGTCTATGTGAACCATGGAGAAAACCTGAAGACTGAGCAGTGGCCCCAGAAACTGATCATGCAGCTTATC
CCTCAGCAGCTGCTGACCACCCTGGGTCCGCTGTTCCGGAACTCAAGAATGGTTCAGTTCCACTTCACCA
ACAAGGACCTGGAGTCCCTCAAAGGCCTCTACCGCATCATGGGCAATGGCTTTGCGGGCTGCGTGCATTT
CCCGCACACGGCCCCATGCGAGGTGCGCGTGCTTATGCTCCTGTACTCGTCTAAGAAGAAGATCTTCATG
GGCCTCATCCCCTACGACCAGAGCGGCTTCGTCAATGGCATCCGCCAGGTCATCACCAACCACAAGCAGG
TCCAGCAGCAGAAGCTGGAGCAACAGCGCGGGCTACAGCTCCGTGCACCACAGCCTCAGCCTCAGGGTGC
CGTGGGAGCTTCTGCGGCTACAGGGCAGCCCCAGCCCCAAGGTGCTACCCAGGCCCCCACAGGCGCACCT
CAAGGTCCTCCTGGAGCAGCCCCTGGCCCACCTCCTTCTGGACCCATCCTGCGGCCCCAGAACCCTGGGG
CCAACCCCCAGCTGCGGAGCCTTCTCCTTAACCCAGCACCGCCCCAGACTGGGGTGCCCCCGCCCCAGGC
CTCCCTACACCACCTACAGCCTCCAGGGGCCCCTACATTGCTGCCACCACATCAGAGCATGGGGCAGCCC
CAGCTGGGGCCGCAGCTCCTGCATCCTCCACCTGCCCAGTCATGGCCCACACAGCTTCCCCAGCGGGCGC
CACTGCCAGGTCAGATGCTGCTGAGCGGGGGTCCCAGGGGCCCGGTCCCCCAGCCGGGCCTGCAGCCCAG
CGTCATGGAGGACGACATCCTCATGGACCTCATCTGA

Translation (618 aa):
MGGGGESCSLIAEGLSTALQLFDDFKKMREQIGQTHRVCLLICNSPPYLLPAVESTTYSGCTTESLVQKI
GERGIHFSIVSPRKLPALRLLFEKAAPPALLEPLQQPADVSQDPRHMVLVRGLVLPVGGSSTSGSLQTKQ
AVPLPPAPASAATLSAAPPQALPPVPPQYQVPGNLSAAQVAAQNAVEAAKSQKAGLGPRFSPINPLQQAA
PGVGPPFSQAPAPPLAPVPPGAPKPPPASQPSLVSTVAPGPVLAAPAQPGAPSLAGTVTPGGVNGPSAAQ
LGGPALGGQQSVSNKLLAWSGVLEWQEKPKPASVDANTKLTRSLPCQVYVNHGENLKTEQWPQKLIMQLI
PQQLLTTLGPLFRNSRMVQFHFTNKDLESLKGLYRIMGNGFAGCVHFPHTAPCEVRVLMLLYSSKKKIFM
GLIPYDQSGFVNGIRQVITNHKQVQQQKLEQQRGLQLRAPQPQPQGAVGASAATGQPQPQGATQAPTGAP
QGPPGAAPGPPPSGPILRPQNPGANPQLRSLLLNPAPPQTGVPPPQASLHHLQPPGAPTLLPPHQSMGQP
QLGPQLLHPPPAQSWPTQLPQRAPLPGQMLLSGGPRGPVPQPGLQPSVMEDDILMDLI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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