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Report for CCDS85329.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85329.1 Public Mus musculus 7 Homer2 23 108 98 CCDS HistoryNCBI Gene:26557Re-query CCDS DB by CCDS ID:85329.1Re-query CCDS DB by GeneID:26557See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85329.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026922.14 ENSMUSP00000026922.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026922.14Link to Ensembl Protein Viewer:ENSMUSP00000026922.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000026922Re-query CCDS DB by Protein ID:ENSMUSP00000026922
Original member Current member NCBI NM_001164086.1 NP_001157558.1 Accepted alive Link to Nucleotide Sequence:NM_001164086.1Link to Protein Sequence:NP_001157558.1Re-query CCDS DB by Nucleotide ID:NM_001164086Re-query CCDS DB by Protein ID:NP_001157558Link to BLAST:NP_001157558.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157558.1 343 Q9QWW1-2 343 100% 0 0

Chromosomal Locations for CCDS 85329.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 81610253 81610441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81611306 81611386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81612261 81612371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81614343 81614499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81618576 81618682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81624252 81624344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81636361 81636492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81649554 81649710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81706759 81706763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1032 nt):
ATGGGAGAACAGCCCATCTTCACCACGCGAGCGCACGTCTTCCAGATTGACCCCAGCACCAAGAAGAACT
GGGTGCCGGCAAGCAAGCAGGCCGTCACGGTTTCCTACTTCTATGATGTCACCAGGAACAGCTATCGGAT
CATCAGTGTGGATGGAGCCAAGGTGATCATAAACAGCACTATCACCCCGAACATGACTTTCACCAAAACG
TCACAGAAGTTCGGGCAGTGGGCTGACAGCAGAGCCAACACCGTGTTCGGTTTGGGATTCTCCTCCGAGC
TGCAGCTCACGAAGTTTGCAGAGAAGTTCCAGGAGGTAAGAGAAGCTGCCAGGCTAGCCAGAGACAAGTC
CCAGGAGAAAACCGAGACCTCCAGCAATCATTCCCAAGCATCCAGCGTCAATGGCACAGACGACGAAAAG
GCCTCTCACGCGAGCCCAGCCGACACTCACCTCAAGTCTGAGAATGACAAGCTGAAGATCGCGCTGACAC
AGAGTGCTGCCAATGTGAAGAAGTGGGAGATGGAGCTGCAGACCCTGCGGGAGAGCAACGCCCGGCTGAC
CACGGCACTGCAGGAGTCGGCGGCCAGCGTGGAGCAGTGGAAGCGGCAGTTCTCCATCTGCAGGGACGAG
AATGACAGGCTCCGCAGCAAGATCGAGGAGCTGGAAGAACAGTGCAGCGAGATAAACAGGGAGAAGGAGA
AGAACACACAGCTGAAGAGGAGGATCGAGGAGCTGGAGTCAGAGGTCCGAGACAAGGAGATGGAGTTGAA
AGATCTCCGAAAACAGAGTGAAATCATACCTCAGCTCATGTCCGAGTGTGAATATGTCTCTGAGAAGTTA
GAGGCGGCCGAAAGAGACAATCAAAACTTGGAAGACAAAGTGCGGTCTCTAAAGACAGACATCGAGGAGA
GTAAATACCGACAGCGCCACCTGAAGGGGGAGCTGAAGAGCTTCCTTGAGGTGCTGGATGGAAAGATCGA
CGACCTCCATGACTTCCGTAGAGGACTCTCCAAGTTAGGCACAGATAACTAG

Translation (343 aa):
MGEQPIFTTRAHVFQIDPSTKKNWVPASKQAVTVSYFYDVTRNSYRIISVDGAKVIINSTITPNMTFTKT
SQKFGQWADSRANTVFGLGFSSELQLTKFAEKFQEVREAARLARDKSQEKTETSSNHSQASSVNGTDDEK
ASHASPADTHLKSENDKLKIALTQSAANVKKWEMELQTLRESNARLTTALQESAASVEQWKRQFSICRDE
NDRLRSKIEELEEQCSEINREKEKNTQLKRRIEELESEVRDKEMELKDLRKQSEIIPQLMSECEYVSEKL
EAAERDNQNLEDKVRSLKTDIEESKYRQRHLKGELKSFLEVLDGKIDDLHDFRRGLSKLGTDN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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