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Report for CCDS85608.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
85608.1 |
Public |
Mus musculus |
8 |
Pkd1l3 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:244646](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:85608.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:244646](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 8 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 85608.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000212537.1 |
ENSMUSP00000148592.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000212537.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000148592.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000212537](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000148592](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001286454.2 |
NP_001273383.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001286454.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001273383.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001286454](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001273383](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001273383.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_001273383.1 |
2191 |
Q2EG98-2 |
2191 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 85608.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (6576 nt): ATGCTCTTGCAGAGGCGGTCCTGGCTCTGGCTGTACATTAGAATCGGTGTCATTCTGGGTGATATTTTGG GACGTAAACCAAGCATCCGGGAGCAACATGGGGGAAACAGCTGCTATCAGCTTAACAGACTTTTCTGTGA CTTCCAGGAAGCAGATAACTACTGCCACGCCCAGAGAGGACGCCTAGCCCACACGTGGAACCCCAAGCTT CGGGGTTTCCTAAAAAGCTTCCTGAATGAAGAAACAGTGTGGTGGGTCAGGGGAAACCTGACGCTGCCCG GATCGCATCCAGGGATAAATCAGACAGGAGGTGATGACGTCTTAAGGAACCAAAAGCCTGGCGAGTGCCC TTCCGTGGTCACACACTCTAATGCTGTCTTCTCAAGATGGAACCTGTGCATAGAGAAGCATCATTTCATT TGCCAGGCTGCCGCCTTTCCCCCTCAAGGTGCAAGCATTTGGAGAAATGAGTTTGGTCCTGGTCCTCTGT TACCCATGAAAAGAAGAGGAGCTGAGACAGAGAGACATATGATCCCAGGAAATGGCCCCCCGTTAGCCAT GTGTCACCAACCCGCTCCTCCTGAGCTTTTTGAGACATTGTGCTTTCCCATTGACCCAGCTTCTTCAGCA CCTCCAAAAGCCACACACAGGATGACAATCACATCCCTAACTGGAAGGCCACAGGTGACATCAGACACAC TTGCATCCAGCAGCCCACCACAGGGGACATCAGACACACCTGCATCCAGCAGCCCACCACAGGTGACATC AGCCACATCTGCATCTAGCAGCCCACCACAGGGGACATCAGACACACCTGCATCCAGCAGCCCACCACAG GTGACATCAGCCACATCTGCATCTAGCAGCCCACCACAGGGGACATCAGACACACCTGCATCCAGCAGCC CACCACAGGTGACATCAGCCACATCTGCATCTAGCAGCCCACCACAGGGGACATCAGACACACCTGCATC CAGCAGCCCACCACAGGTGACATCAGCCACATCTGCATCTAGCAGCCCACCACAGGGGACATCAGACACA CCTGCATCCAGCAGCCCACCACAGGGGACATTAGACACACCTTCATCTAGCAGCCCACCACAGGGGACAT CAGACACACCTGCATCCAGCAGCCCACCACAGGGGACATCAGAGACACCTGCATCCAACAGCCCACCACA GGGGACATCAGAGACACCTGGATTCAGCAGCCCACCACAGGTGACAACAGCCACACTTGTATCCAGCAGC CCACCACAGGTGACATCAGAGACACCTGCATCCAGCAGCCCAACACAGGTGACATCAGAGACACCTGCAT CCAGCAGCCCAACACAGGTGACATCAGACACACCTGCATCCAATAGCCCACCACAGGGGACATCAGACAC ACCTGGATTCAGCAGCCCAACACAGGTGACAACAGCCACACTTGTATCCAGCAGCCCACCACAGGTGACA TCAGACACACCTGCATCCAGCAGCCCACCACAGGTGACATCAGACACACCTGCATCCAGCAGCCCACCAC AGGTGACATCAGAGACACCTGCATCCAGCAGCCCACCACAGGTGACATCAGACACATCTGCATCCATCAG CCCACCACAGGTAATATCAGACACACCTGCATCCAGCAGCCCACCACAGGTGACATCAGAGACACCTGCA TCCAGCAGCCCAACAAACATGACATCAGACACACCTGCATCCAGCAGCCCAACAAACATGACATCAGACA CACCTGCATCCAGCAGCCCAACAAACATGACATCAGACACACCTGCATCCAGCAGCCCACCATGGCCTGT TATAACAGAGGTCACCAGGCCTGAATCCACAATACCTGCTGGAAGATCTTTGGCAAACATCACTTCAAAG GCACAGGAAGACTCTCCCCTGGGAGTCATCTCTACCCATCCACAGATGTCATTTCAGAGTTCAACCAGTC AGGCCTTGGATGAGACAGCAGGGGAACGGGTCCCAACAATTCCTGATTTCCAAGCCCACAGTGAATTCCA GAAAGCTTGTGCCATCCTCCAGAGACTGAGAGACTTCCTGCCGACTTCTCCCACATCAGCTCAGGTCAGT GTGGCCAATTTACTCATTGACCTGAGTGAGCAGTTGCTGGTGCTCCCGTTTCAGAAGAACAACAGTTGGA GCTCTCAAACTCCAGCAGTCAGCTGCCCCTTCCAGCCTCTTGGACGTCTAACAACAACGGAAAAAAGCAG TCATCAGATGGCTCAGCAAGACATGGAACAGGTTGAAGACATGCTGGAGACATCCCTGATGGCCCTGGGG GAGATCCACAGAGCATTTTGCCAGCAGAGTCTGTGCCCTCAGTCAGCAGTGACCCTGGCCTCTCCCTCTG CTACTCTGATGTTGAGCAGCCAAAATGTGTCAACGTTGCCCCTGAGCACCTACACTTTGGGTGAGCCTGC ACCCTTGACTTTGGGCTTCCCGTCAGCAGAAGCTCTGAAGGAGCTCTTGAACAAACACCCAGGCGTGAAC CTTCAAGTGACAGGTCTGGCTTTCAACCCTTTTAAGACTTTGGATGACAAGAACATTGTTGGAAGCATTG GAAATGTGCAGCTGAGCTCTGCTTATCAGTCGATCAGAGTCCACGACTTAATAGAAGATATTGAGATCAT GCTCTGGAGAAATGCCAGCATGGAGACCCAGCCCACCAGCCTCAACACAAGTACAGACCATTTCACAATC TCTGTGAACATCACTTCCTTGGAGAAGACCCTCATTGTGACCATCGAGCCTGAAAGTCCCCTCCTAATGA CGCTCCACTTGGGCTTCCAGGACCAGCTGGCCCACACTCACTTCTATCTCAACATCAGCCTGCCAAGGGA CCAAGTGTGGCAGAAAGATGAGGAGTACACGTGGGTGCTGACACCAGAGAACCTGTGGTACGGGACTGGC ACCTACTACATAATGGCTGTGGAGAATAAAAGTACAGAGGCGGCACAGCACACACCCGTCCTGGTCTCAG TGGTCACAGCTGTCACCCAGTGCTATTTCTGGGACCGATACAATAGGACATGGAAGAGCGATGGATGCCA AGTGGGGCCGAAGAGCACCATTTTAAAGACACAGTGTCTCTGTGACCACCTGACCTTCTTCAGCAGCGAC TTCTTCATCGTGCCGAGGACGGTGGATGTAGAAAACACCATCAAACTGCTTCTTCATGTGACCAACAACC CTGTCGGGGTGTCATTGCTGTCCAGCCTCCTAGGATTCTATATCCTCTTAGCCATGTGGGCTTCCAGAAA GGATCGAGAAGATATGCAGAAGGTGAAGGTAACAGTCCTGGCTGACAATGACCCCAGCTCTGCATCCCAC TACCTTATCCAGGTCTACACTGGCTATCGGAGGAGGGCTGCTACCACCGCCAAGGTCGTTATCACTCTCT ATGGCTCAGAGGGGCACAGTGAGCCCCACCACCTTTGTGACCCTGAGAAGACAGTTTTTGAGCGTGGAGC ACTGGATGTTTTCCTTCTTTCCACCGGATCCTGGCTGGGGGACCTGCATGGCCTTCGGCTGTGGCATGAC AATTCTGGCGACAGCCCTTCTTGGTATGTAAGCCAGGTGATCGTCAGTGACATGACCACGAGGAAGAAAT GGCATTTCCAGTGCAATTGTTGGCTGGCCGTGGACTTGGGCAACTGTGAGCGTGACAGGGTGTTCACACC AGCCTCCAGAAGCGAGCTCTCTTCCTTCAGACACCTGTTCTCCTCCACAATCGTAGAAAAGTTCACCCAG GATTATCTGTGGCTCTCAGTTGCAACTCGACATCCCTGGAACCAGTTTACACGAGTCCAGAGGCTCTCCT GCTGCATGGCACTACTGCTCTGTGACATGGTCATCAATATTATGTTCTGGAAGATGGGTGGCACCACTGC CAAGAGGGGCACCGAACAACTAGGTCCACTTGCTGTGACCTTGTCGGAGCTGCTCGTCAGCATCCAGACC TCCATCATCCTCTTCCCCATCCACCTCATCTTTGGGCGGCTCTTCCAGTTGATTCACCCACCAGAAGCTC TGCCCCAGCTTCCTTTCATCCAGGCTGCCTGGCCCCCTGCTCTTGTTTGTGAGTCCCCCTCTCTTACACA GGTGGTCAAGGAATTAAAGGAAACTGTGGGATTCCTGCTCAGGAGAAATACACAGCTGCTCTCGGAGTGT GAGCCGTCTTCGTGCAGTTCTTGTGACATTAACAAGCTGGCGAAGCTTTTATCCGGCCTCATTTACTGTC ACTTAGAAGACGAAGGCTGTCACCAGCAGACAGAATCCCACTGGGAAGACGCAGTGTCTGAAAACCATTA CCATTTCTGCCGCTACCTTCTCCAACTTCTGCGGAGACTGAAAGCGCATTTAGAGGCTCTTGGTGCTACC CAGGATCACCAGTCTTGTGATTTCTCAGAAGCAGTCAGCCAACTTCAAAACCTCCAGGAACTCCTGGAGA CACAGACTCTCCGCAGAGGGCCAGGGCCATGCAGGCATTCCACCAGTTTCCCCATCCTCAGCCCAGGAGA AGGGAAGAAGCCCATGTCATTTTGCCTGTTCAGATGGTTGAAGTGCAGCTGCTGGCTCCTTCTTGGTGTC ATCAGCCTGGCCTCGGCCTTTTTTATAACGCTCTATAGCTTGGAGTTGGACAAAGACCAAGCCACCAGCT GGGTTATTTCAATGATGCTGTCGGTACTACAAGACATCTTTATCAGCCAGCCGATAAAGGTCATCTTCCT GACATTGTTGTTCTCCCTGATGGCAAACCACATGCCGTGGCTTAACAAAGACAAGGAACAACACGCCCGG AGAATCGTAGCACTTTGGGCAAAGTGTCCTTGGTCGGCACCTGGCTTGAGAGACAAGAACAATCCCATCT ACACTGCCCCAGCAATGAACAACCTAGCCAAGCCTACAAGGAAGGCCTGGAAGAAGCAGCTCTCCAAGCT GACGGGTGGTACTCTGGTGCAAATCCTCTTCCTGACCCTGCTGATGACTACCGTCTATTCTGCAAAGGAC TCTAGTCGATTTTTCCTCCATCGAGCTATCTGGAAGAGGTTTTCTCACCGTTTCTCAGAAATCAAAACTG TAGAGGATTTCTACCCCTGGGCCAACGGCACCCTCCTTCCTAACCTATATGGGGATTACAGAGGATTTAT TACTGACGGGAACTCCTTTCTTCTGGGCAATGTTTTGATCCGCCAGACTCGCATTCCTAATGACATATTC TTCCCAGGATCTCTCCACAAGCAAATGAAGTCGCCTCCCCAACATCAGGAGGACAGAGAGAACTATGGGG CTGGCTGGGTCCCCCCTGACACAAACATCACAAAAGTAGACAGTATTTGGCATTATCAGAATCAGGAGTC GCTGGGAGGCTATCCCATCCAAGGGGAGCTAGCCACTTACTCAGGAGGAGGCTATGTTGTGAGGCTTGGA AGAAACCACAGTGCGGCAACCAGGGTTCTGCAGCATCTGGAACAGAGGCGCTGGCTGGACCACTGCACAA AAGCCCTCTTTGTAGAATTCACGGTCTTCAATGCTAATGTGAATCTGCTCTGTGCGGTGACCCTCATCTT GGAATCCAGTGGTGTGGGGACTTTCCTCACCTCCCTGCAACTGGACAGTTTAACTTCCCTTCAGTCATCA GAGAGGGGCTTCGCCTGGATCGTCTCACAGGTCGTCTACTACCTTCTCGTCTGTTACTATGCCTTCATCC AGGGCTGTCGGCTGAAGCGGCAGAGGCTGGCGTTCTTCACTAGGAAAAGGAACCTCCTGGACACAAGCAT CGTCCTCATTAGCTTCAGCATCCTGGGCCTCAGCATGCAGAGCCTCTCTCTACTTCACAAAAAGATGCAG CAGTACCACTGTGACCGGGACAGGTTCATCAGTTTCTACGAGGCACTGAGAGTGAACTCTGCAGTCACCC ACCTCAGGGGCTTCCTGCTTCTCTTCGCAACTGTGCGGGTCTGGGACCTACTGCGACATCATGCCCAGTT ACAGGTCATCAACAAGACACTGTCCAAAGCCTGGGACGAGGTGCTGGGCTTTATACTGATCATCGTGGTC CTGTTAAGCAGCTATGCCATGACTTTCAACCTGCTGTTTGGATGGAGCATCTCTGACTACCAGAGCTTCT TCAGATCTATAGTGACTGTTGTTGGCCTCTTGATGGGAACTTCAAAGCACAAGGAGGTTATTGCTCTATA CCCAATCCTGGGCTCCCTTTTGGTTCTCAGTAGCATCATCTTGATGGGACTTGTGATCATTAATCTTTTT GTTTCTGCCATTCTCATTGCCTTTGGGAAAGAAAGGAAGGCCTGTGAGAAAGAAGCTACACTGACAGATA TGTTACTACAAAAGCTCTCAAGTCTGTTAGGAATCCGCCTGCACCAGAATCCATCTGAGGAACACGCTGA CAACACTGGTTCCTCAAATCTCCGGGAAAGATCATCAAAGTCTATGTCTTCTGATGCTGAGGTGCTGGCT CCAGCAGATGCAGTTGGAAGTGTGTCTGGCACCGATGGCAACTCTGGCAGTACAAAGGTGTTGTAA
Translation (2191 aa): MLLQRRSWLWLYIRIGVILGDILGRKPSIREQHGGNSCYQLNRLFCDFQEADNYCHAQRGRLAHTWNPKL RGFLKSFLNEETVWWVRGNLTLPGSHPGINQTGGDDVLRNQKPGECPSVVTHSNAVFSRWNLCIEKHHFI CQAAAFPPQGASIWRNEFGPGPLLPMKRRGAETERHMIPGNGPPLAMCHQPAPPELFETLCFPIDPASSA PPKATHRMTITSLTGRPQVTSDTLASSSPPQGTSDTPASSSPPQVTSATSASSSPPQGTSDTPASSSPPQ VTSATSASSSPPQGTSDTPASSSPPQVTSATSASSSPPQGTSDTPASSSPPQVTSATSASSSPPQGTSDT PASSSPPQGTLDTPSSSSPPQGTSDTPASSSPPQGTSETPASNSPPQGTSETPGFSSPPQVTTATLVSSS PPQVTSETPASSSPTQVTSETPASSSPTQVTSDTPASNSPPQGTSDTPGFSSPTQVTTATLVSSSPPQVT SDTPASSSPPQVTSDTPASSSPPQVTSETPASSSPPQVTSDTSASISPPQVISDTPASSSPPQVTSETPA SSSPTNMTSDTPASSSPTNMTSDTPASSSPTNMTSDTPASSSPPWPVITEVTRPESTIPAGRSLANITSK AQEDSPLGVISTHPQMSFQSSTSQALDETAGERVPTIPDFQAHSEFQKACAILQRLRDFLPTSPTSAQVS VANLLIDLSEQLLVLPFQKNNSWSSQTPAVSCPFQPLGRLTTTEKSSHQMAQQDMEQVEDMLETSLMALG EIHRAFCQQSLCPQSAVTLASPSATLMLSSQNVSTLPLSTYTLGEPAPLTLGFPSAEALKELLNKHPGVN LQVTGLAFNPFKTLDDKNIVGSIGNVQLSSAYQSIRVHDLIEDIEIMLWRNASMETQPTSLNTSTDHFTI SVNITSLEKTLIVTIEPESPLLMTLHLGFQDQLAHTHFYLNISLPRDQVWQKDEEYTWVLTPENLWYGTG TYYIMAVENKSTEAAQHTPVLVSVVTAVTQCYFWDRYNRTWKSDGCQVGPKSTILKTQCLCDHLTFFSSD FFIVPRTVDVENTIKLLLHVTNNPVGVSLLSSLLGFYILLAMWASRKDREDMQKVKVTVLADNDPSSASH YLIQVYTGYRRRAATTAKVVITLYGSEGHSEPHHLCDPEKTVFERGALDVFLLSTGSWLGDLHGLRLWHD NSGDSPSWYVSQVIVSDMTTRKKWHFQCNCWLAVDLGNCERDRVFTPASRSELSSFRHLFSSTIVEKFTQ DYLWLSVATRHPWNQFTRVQRLSCCMALLLCDMVINIMFWKMGGTTAKRGTEQLGPLAVTLSELLVSIQT SIILFPIHLIFGRLFQLIHPPEALPQLPFIQAAWPPALVCESPSLTQVVKELKETVGFLLRRNTQLLSEC EPSSCSSCDINKLAKLLSGLIYCHLEDEGCHQQTESHWEDAVSENHYHFCRYLLQLLRRLKAHLEALGAT QDHQSCDFSEAVSQLQNLQELLETQTLRRGPGPCRHSTSFPILSPGEGKKPMSFCLFRWLKCSCWLLLGV ISLASAFFITLYSLELDKDQATSWVISMMLSVLQDIFISQPIKVIFLTLLFSLMANHMPWLNKDKEQHAR RIVALWAKCPWSAPGLRDKNNPIYTAPAMNNLAKPTRKAWKKQLSKLTGGTLVQILFLTLLMTTVYSAKD SSRFFLHRAIWKRFSHRFSEIKTVEDFYPWANGTLLPNLYGDYRGFITDGNSFLLGNVLIRQTRIPNDIF FPGSLHKQMKSPPQHQEDRENYGAGWVPPDTNITKVDSIWHYQNQESLGGYPIQGELATYSGGGYVVRLG RNHSAATRVLQHLEQRRWLDHCTKALFVEFTVFNANVNLLCAVTLILESSGVGTFLTSLQLDSLTSLQSS ERGFAWIVSQVVYYLLVCYYAFIQGCRLKRQRLAFFTRKRNLLDTSIVLISFSILGLSMQSLSLLHKKMQ QYHCDRDRFISFYEALRVNSAVTHLRGFLLLFATVRVWDLLRHHAQLQVINKTLSKAWDEVLGFILIIVV LLSSYAMTFNLLFGWSISDYQSFFRSIVTVVGLLMGTSKHKEVIALYPILGSLLVLSSIILMGLVIINLF VSAILIAFGKERKACEKEATLTDMLLQKLSSLLGIRLHQNPSEEHADNTGSSNLRERSSKSMSSDAEVLA PADAVGSVSGTDGNSGSTKVL
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