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Report for CCDS85933.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85933.1 Public Homo sapiens 1 HSPB7 24 110 108 CCDS HistoryNCBI Gene:27129Re-query CCDS DB by CCDS ID:85933.1Re-query CCDS DB by GeneID:27129See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85933.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000411503.5 ENSP00000391578.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000411503.5Link to Ensembl Protein Viewer:ENSP00000391578.1Re-query CCDS DB by Nucleotide ID:ENST00000411503Re-query CCDS DB by Protein ID:ENSP00000391578
Original member Current member NCBI NM_001349687.2 NP_001336616.1 Accepted alive Link to Nucleotide Sequence:NM_001349687.2Link to Protein Sequence:NP_001336616.1Re-query CCDS DB by Nucleotide ID:NM_001349687Re-query CCDS DB by Protein ID:NP_001336616Link to BLAST:NP_001336616.1

Chromosomal Locations for CCDS 85933.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 16015580 16015759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16017089 16017207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16017765 16017963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (498 nt):
ATGAGCCACAGAACCTCTTCCACCTTCCGAGCGGAGAGAAGTTTCCATTCCTCTTCCTCTTCCTCCTCCT
CTTCCACCTCCTCCTCGGCCTCCCGTGCTCTCCCGGCCCAGGACCCGCCCATGGAGAAGGCCCTGAGCAT
GTTTTCCGATGACTTTGGCAGCTTCATGCGGCCCCACTCGGAGCCCCTGGCCTTCCCAGCCCGCCCCGGT
GGGGCAGGCAACATCAAGACCCTAGGAGACGCCTATGAGTTTGCGGTGGACGTGAGAGACTTCTCACCTG
AAGACATCATTGTCACCACCTCCAACAACCACATCGAGCTGGCGGCTGACGGCACTGTCATGAACACCTT
CGCTCACAAGTGCCAGCTGCCGGAGGACGTGGACCCGACGTCGGTGACCTCGGCTCTGCGGGAGGACGGC
AGCCTCACTATCCGGGCACGGCGTCACCCGCATACAGAACACGTCCAGCAGACCTTCCGGACGGAGATCA
AAATCTGA

Translation (165 aa):
MSHRTSSTFRAERSFHSSSSSSSSSTSSSASRALPAQDPPMEKALSMFSDDFGSFMRPHSEPLAFPARPG
GAGNIKTLGDAYEFAVDVRDFSPEDIIVTTSNNHIELAADGTVMNTFAHKCQLPEDVDPTSVTSALREDG
SLTIRARRHPHTEHVQQTFRTEIKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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