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Report for CCDS86003.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86003.1 Public Homo sapiens 1 PRPF38B 24 110 108 CCDS HistoryNCBI Gene:55119Re-query CCDS DB by CCDS ID:86003.1Re-query CCDS DB by GeneID:55119See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 86003.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370021.1 ENSP00000359038.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000370021.1Link to Ensembl Protein Viewer:ENSP00000359038.1Re-query CCDS DB by Nucleotide ID:ENST00000370021Re-query CCDS DB by Protein ID:ENSP00000359038
Original member Current member NCBI NM_001349757.2 NP_001336686.1 Accepted alive Link to Nucleotide Sequence:NM_001349757.2Link to Protein Sequence:NP_001336686.1Re-query CCDS DB by Nucleotide ID:NM_001349757Re-query CCDS DB by Protein ID:NP_001336686Link to BLAST:NP_001336686.1

Chromosomal Locations for CCDS 86003.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 108695759 108695770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108696043 108696194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108696277 108696337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108698604 108698827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108699162 108700020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1308 nt):
ATGTGCGGAGGGGTTCGAGGTGTTGGAACAGGAGGAATTGTTTCTACAGCATTTTGCCTGTTATACAAAT
TATTTACCCTGAAGTTAACTCGAAAGCAAGTGATGGGTCTTATAACACACACAGACTCTCCATATATTAG
AGCGCTTGGATTTATGTATATAAGATATACACAGCCCCCTACAGATCTGTGGGACTGGTTTGAATCCTTC
CTTGATGATGAAGAGGACCTAGATGTGAAGGCTGGTGGAGGCTGTGTAATGACCATTGGAGAAATGCTAC
GATCTTTTCTCACAAAACTGGAGTGGTTTTCTACCTTGTTTCCAAGAATTCCAGTTCCAGTTCAAAAGAA
TATTGATCAACAGATTAAAACCCGACCTAGAAAAATCAAGAAAGATGGGAAGGAAGGTGCTGAGGAAATA
GACAGACATGTTGAACGCAGACGTTCAAGGTCTCCAAGGAGATCTCTGAGTCCACGGAGGTCCCCAAGAA
GGTCAAGAAGTAGAAGTCATCATCGGGAGGGCCATGGGTCTTCTAGTTTTGACAGAGAATTAGAAAGAGA
GAAAGAACGCCAGCGACTAGAGCGTGAAGCCAAAGAAAGGGAGAAAGAACGGCGAAGATCCCGAAGTATT
GACCGGGGGTTAGAACGCAGGCGCAGCAGAAGTAGGGAAAGGCATAGAAGTCGCAGTCGAAGTCGTGATA
GGAAAGGGGATAGAAGGGACAGGGATCGAGAAAGAGAGAAAGAAAATGAGAGAGGTAGAAGACGAGATCG
TGACTATGATAAGGAAAGAGGAAATGAACGAGAAAAAGAGAGAGAGCGATCAAGAGAAAGGTCCAAGGAA
CAGAGAAGTAGGGGAGAGGTAGAAGAGAAGAAACATAAAGAAGACAAAGATGATAGGCGGCACAGAGATG
ACAAAAGAGATTCCAAGAAAGAGAAAAAACACAGTAGAAGCAGAAGCAGAGAAAGGAAACACAGAAGTAG
GAGTCGAAGTAGAAATGCAGGGAAACGAAGTAGAAGTAGAAGCAAAGAGAAATCAAGTAAACATAAAAAT
GAAAGTAAAGAAAAATCAAATAAACGAAGTCGAAGTGGCAGTCAAGGAAGAACTGACAGTGTTGAAAAAT
CAAAAAAACGGGAACATAGTCCCAGCAAAGAAAAATCTAGAAAGCGTAGTAGAAGCAAAGAACGTTCCCA
CAAACGAGATCACAGTGATAGTAAGGACCAGTCAGACAAACATGATCGTCGAAGGAGCCAAAGTATAGAA
CAAGAGAGCCAAGAAAAACAGCATAAAAACAAAGATGAGACTGTGTGA

Translation (435 aa):
MCGGVRGVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDLWDWFESF
LDDEEDLDVKAGGGCVMTIGEMLRSFLTKLEWFSTLFPRIPVPVQKNIDQQIKTRPRKIKKDGKEGAEEI
DRHVERRRSRSPRRSLSPRRSPRRSRSRSHHREGHGSSSFDRELEREKERQRLEREAKEREKERRRSRSI
DRGLERRRSRSRERHRSRSRSRDRKGDRRDRDREREKENERGRRRDRDYDKERGNEREKERERSRERSKE
QRSRGEVEEKKHKEDKDDRRHRDDKRDSKKEKKHSRSRSRERKHRSRSRSRNAGKRSRSRSKEKSSKHKN
ESKEKSNKRSRSGSQGRTDSVEKSKKREHSPSKEKSRKRSRSKERSHKRDHSDSKDQSDKHDRRRSQSIE
QESQEKQHKNKDETV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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