NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS86083.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86083.1 Public Homo sapiens 10 ZNF248 24 110 108 CCDS HistoryNCBI Gene:57209Re-query CCDS DB by CCDS ID:86083.1Re-query CCDS DB by GeneID:57209See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 86083.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000485560.5 ENSP00000473904.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000485560.5Link to Ensembl Protein Viewer:ENSP00000473904.1Re-query CCDS DB by Nucleotide ID:ENST00000485560Re-query CCDS DB by Protein ID:ENSP00000473904
Original member Current member NCBI NM_001352493.2 NP_001339422.1 Accepted alive Link to Nucleotide Sequence:NM_001352493.2Link to Protein Sequence:NP_001339422.1Re-query CCDS DB by Nucleotide ID:NM_001352493Re-query CCDS DB by Protein ID:NP_001339422Link to BLAST:NP_001339422.1
Original member Current member NCBI NM_001352494.2 NP_001339423.1 Accepted alive Link to Nucleotide Sequence:NM_001352494.2Link to Protein Sequence:NP_001339423.1Re-query CCDS DB by Nucleotide ID:NM_001352494Re-query CCDS DB by Protein ID:NP_001339423Link to BLAST:NP_001339423.1

Chromosomal Locations for CCDS 86083.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 37803938 37803943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 37833025 37833116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 37837617 37837712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 37837985 37838111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 37856296 37856310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (336 nt):
ATGAACAAATCCCAGGAACAAGTGTCATTCAAGGATGTATGTGTGGACTTCACTCAGGAAGAGTGGTATC
TGCTGGACCCTGCTCAGAAGATTCTATACAGAGATGTGATCCTGGAAAATTATAGCAATCTTGTCTCAGT
AGGGTATTGCATTACTAAACCAGAAGTGATCTTTAAGATCGAGCAAGGAGAAGAGCCCTGGATATTAGAA
AAAGGATTCCCAAGCCAGTGCCACCCAGAAAGGAAATGGAAAGTTGATGACGTGTTAGAGAGCAGCCAGG
AAAATGAAGATGACCATTTTTGGGAGCTTCTATTCCACAACAACAAAACACATTGA

Translation (111 aa):
MNKSQEQVSFKDVCVDFTQEEWYLLDPAQKILYRDVILENYSNLVSVGYCITKPEVIFKIEQGEEPWILE
KGFPSQCHPERKWKVDDVLESSQENEDDHFWELLFHNNKTH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH