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Report for CCDS86258.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86258.1 Public Homo sapiens 11 VSIG2 24 110 108 CCDS HistoryNCBI Gene:23584Re-query CCDS DB by CCDS ID:86258.1Re-query CCDS DB by GeneID:23584See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 86258.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000403470.1 ENSP00000385013.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000403470.1Link to Ensembl Protein Viewer:ENSP00000385013.1Re-query CCDS DB by Nucleotide ID:ENST00000403470Re-query CCDS DB by Protein ID:ENSP00000385013
Original member Current member NCBI NM_001329920.2 NP_001316849.1 Accepted alive Link to Nucleotide Sequence:NM_001329920.2Link to Protein Sequence:NP_001316849.1Re-query CCDS DB by Nucleotide ID:NM_001329920Re-query CCDS DB by Protein ID:NP_001316849Link to BLAST:NP_001316849.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001316849.1 284 Q96IQ7-2 284 100% 0 0

Chromosomal Locations for CCDS 86258.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 124748386 124748534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 124748644 124748763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 124749708 124749866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 124750714 124750921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 124751423 124751580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 124752077 124752137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (855 nt):
ATGGCCGAGCTCCCGGGGCCCTTTCTCTGCGGGGCCCTGCTAGGCTTCCTGTGCCTGAGTGGGCTGGCCG
TGGAGGTGAAGGTACCCACAGAGCCGCTGAGCACGCCCCTGGGGAAGACAGCCGAGCTGACCTGCACCTA
CAGCACGTCGGTGGGAGACAGCTTCGCCCTGGAGTGGAGCTTTGTGCAGCCTGGGAAACCCATCTCTGAG
TCCCATCCAATCCTGTACTTCACCAATGGCCATCTGTATCCAACTGGTTCTAAGTCAAAGCGGGTCAGCC
TGCTTCAGAACCCCCCCACAGTGGGGGTGGCCACACTGAAACTGACTGACGTCCACCCCTCAGATACTGG
AACCTACCTCTGCCAAGTCAACAACCCACCAGATTTCTACACCAATGGGTTGGGGCTAATCAACCTTACT
GTGCTGGTTCCCCCCAGTAATCCCTTATGCAGTCAGAGTGGACAAACCTCTGTGGGAGGCTCTACTGCAC
TGAGATGCAGCTCTTCCGAGGGGGCTCCTAAGCCAGTGTACAACTGGGTGCGTCTTGGAACTTTTCCTAC
ACCTTCTCCTGGCAGCATGGTTCAAGATGAGGTGTCTGGCCAGCTCATTCTCACCAACCTCTCCCTGACC
TCCTCGGGCACCTACCGCTGTGTGGCCACCAACCAGATGGGCAGTGCATCCTGTGAGCTGACCCTCTCTG
TGACCGAACCCTCCCAAGGCCGAGTGGCCGGAGCTCTGATTGGGGTGCTCCTGGGCGTGCTGTTGCTGTC
AGTTGCTGCGTTCTGCCTGGTCAGGTTCCAGAAAGAGAGGGGGAAGAAGCCCAAGGAGACATATGGGGGT
AGTGACCTTCGGTGA

Translation (284 aa):
MAELPGPFLCGALLGFLCLSGLAVEVKVPTEPLSTPLGKTAELTCTYSTSVGDSFALEWSFVQPGKPISE
SHPILYFTNGHLYPTGSKSKRVSLLQNPPTVGVATLKLTDVHPSDTGTYLCQVNNPPDFYTNGLGLINLT
VLVPPSNPLCSQSGQTSVGGSTALRCSSSEGAPKPVYNWVRLGTFPTPSPGSMVQDEVSGQLILTNLSLT
SSGTYRCVATNQMGSASCELTLSVTEPSQGRVAGALIGVLLGVLLLSVAAFCLVRFQKERGKKPKETYGG
SDLR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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