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Report for CCDS86301.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86301.1 Public Homo sapiens 12 LETMD1 24 110 108 CCDS HistoryNCBI Gene:25875Re-query CCDS DB by CCDS ID:86301.1Re-query CCDS DB by GeneID:25875See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 86301.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000552739.5 ENSP00000450333.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000552739.5Link to Ensembl Protein Viewer:ENSP00000450333.1Re-query CCDS DB by Nucleotide ID:ENST00000552739Re-query CCDS DB by Protein ID:ENSP00000450333
Original member Current member NCBI NM_001351330.2 NP_001338259.1 Accepted alive Link to Nucleotide Sequence:NM_001351330.2Link to Protein Sequence:NP_001338259.1Re-query CCDS DB by Nucleotide ID:NM_001351330Re-query CCDS DB by Protein ID:NP_001338259Link to BLAST:NP_001338259.1

Chromosomal Locations for CCDS 86301.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 51048357 51048478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51055835 51056021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51056144 51056245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51056350 51056502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51058032 51058128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51059361 51059431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (732 nt):
ATGGCGCTCTCCAGGGTGTGCTGGGCTCGGTCGGCTGTGTGGGGCTCGGCAGTCACCCCTGGACATTTTG
TCACCCGGAGGCTGCAACTTGGTCGCTCTGGCCTGGCTTGGGGGGCCCCTCGGTACCTGTTTCCCAGGCA
ACTACTGATCAGGCATTTCTGGACCCCAAAACAACAAACTGATTTCTTAGATATCTATCATGCTTTCCGG
AAGCAGTCCCACCCAGAAATTATTAGTTATTTAGAAAAGGTCATCCCTCTCATTTCTGATGCAGGACTCC
GGTGGCGTCTGACAGATCTGTGCACCAAGATACAGCGTGGTACCCACCCAGCAATACATGATATCTTGGC
TCTGAGAGAGTGTTTCTCTAACCATCCTCTGGGCATGAACCAACTCCAGGCTTTGCACGTGAAAGCCTTG
AGCCGGGCCATGCTTCTCACATCTTACCTGCCTCCTCCCTTGTTGAGACATCGTTTGAAGACTCATACAA
CTGTGATTCACCAACTGGACAAGGCTTTGGCAAAGCTGGGGATTGGCCAGCTGACTGCTCAGGAAGTAAA
ATCGGCTTGTTATCTCCGTGGCCTGAATTCTACGCATATTGGTGAAGATAGGTGTCGAACTTGGCTGGGA
GAATGGCTGCAGATTTCCTGCAGCCTGAAAGAAGCTGAGCTGTCTCTCTTGCTGCACAACGTGGTCCTGC
TCTCCACCAACTACCTTGGGACAAGGCGCTGA

Translation (243 aa):
MALSRVCWARSAVWGSAVTPGHFVTRRLQLGRSGLAWGAPRYLFPRQLLIRHFWTPKQQTDFLDIYHAFR
KQSHPEIISYLEKVIPLISDAGLRWRLTDLCTKIQRGTHPAIHDILALRECFSNHPLGMNQLQALHVKAL
SRAMLLTSYLPPPLLRHRLKTHTTVIHQLDKALAKLGIGQLTAQEVKSACYLRGLNSTHIGEDRCRTWLG
EWLQISCSLKEAELSLLLHNVVLLSTNYLGTRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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