NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS86402.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86402.1 Public Homo sapiens 14 CCDC196 24 110 108 CCDS HistoryNCBI Gene:440184Re-query CCDS DB by CCDS ID:86402.1Re-query CCDS DB by GeneID:440184See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 86402.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000636229.1 ENSP00000489898.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000636229.1Link to Ensembl Protein Viewer:ENSP00000489898.1Re-query CCDS DB by Nucleotide ID:ENST00000636229Re-query CCDS DB by Protein ID:ENSP00000489898
Original member Current member NCBI NM_001351576.1 NP_001338505.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001351576.1Link to Protein Sequence:NP_001338505.1Re-query CCDS DB by Nucleotide ID:NM_001351576Re-query CCDS DB by Protein ID:NP_001338505Link to BLAST:NP_001338505.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001338505.1 297 A0A1B0GTZ2 297 100% 0 0

Chromosomal Locations for CCDS 86402.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 66486503 66486552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66486657 66486809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66488160 66488256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66488987 66489037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66490742 66490819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66491021 66491104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66491626 66491685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66492053 66492194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66498109 66498167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66498353 66498472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (894 nt):
ATGACAAGTGGTGCAAACTCTTCAGGATCTTACCTGCCCTCAGAAATAAGAAGTTCTAAAATAGATGACA
ACTACTTGAAGGAATTGAATGAGGACTTAAAGCTAAGGAAGCAGGAACTGCTAGAGATGCTCAAACCTCT
AGAAGATAAAAACAACCTCTTATTTCAAAAGTTAATGTCTAACTTGGAGGAAAAACAAAGGAGTCTTCAG
ATCATGAGACAGATCATGGCAGGGAAGGGGTGTGAGGAATCCTCGGTCATGGAGCTCCTTAAGGAAGCAG
AGGAGATGAAACAGAACTTGGAAAGGAAAAACAAGATGCTTCGGAAGGAAATGGAGATGCTATGGAACAA
GACATTCGAGGCAGAAGAACTTAGTGATCAACAAAAAGCACCACAGACAAAAAACAAGGCAGACTTGCAG
GATGGAAAGGCTCCCAAATCCCCCTCATCACCTAGGAAGACTGAGAGTGAACTGGAGAAATCATTTGCAG
AGAAAGTGAAGGAGATAAGGAAGGAAAAGCAACAGAGGAAAATGGAATGGGTCAAGTATCAGGAACAAAA
TAACATCCTTCAGAATGATTTTCATGGCAAAGTGATTGAGCTGAGAATTGAAGCCTTGAAGAACTACCAG
AAGGCCAATGACCTGAAATTATCACTGTATTTGCAGCAGAATTTTGAGCCAATGCAAGCATTTTTAAATC
TTCCTGGGTCCCAAGGTACTATGGGCATTACAACTATGGACAGAGTGACTACTGGCAGAAATGAACACCA
TGTGAGAATTCTGGGAACAAAGATCTACACAGAACAACAAGGAACTAAAGGAAGTCAGCTTGATAATACA
GGAGGGAGACTCTTTTTTCTGAGGTCATTGCCAGATGAAGCACTGAAGAATTAG

Translation (297 aa):
MTSGANSSGSYLPSEIRSSKIDDNYLKELNEDLKLRKQELLEMLKPLEDKNNLLFQKLMSNLEEKQRSLQ
IMRQIMAGKGCEESSVMELLKEAEEMKQNLERKNKMLRKEMEMLWNKTFEAEELSDQQKAPQTKNKADLQ
DGKAPKSPSSPRKTESELEKSFAEKVKEIRKEKQQRKMEWVKYQEQNNILQNDFHGKVIELRIEALKNYQ
KANDLKLSLYLQQNFEPMQAFLNLPGSQGTMGITTMDRVTTGRNEHHVRILGTKIYTEQQGTKGSQLDNT
GGRLFFLRSLPDEALKN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH