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Report for CCDS865.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
865.1 Public Homo sapiens 1 AP4B1 24 110 108 CCDS HistoryNCBI Gene:10717Re-query CCDS DB by CCDS ID:865.1Re-query CCDS DB by GeneID:10717See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 865.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000256658.8 ENSP00000256658.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000256658.8Link to Ensembl Protein Viewer:ENSP00000256658.4Re-query CCDS DB by Nucleotide ID:ENST00000256658Re-query CCDS DB by Protein ID:ENSP00000256658
Original member Current member EBI ENST00000369569.6 ENSP00000358582.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000369569.6Link to Ensembl Protein Viewer:ENSP00000358582.1Re-query CCDS DB by Nucleotide ID:ENST00000369569Re-query CCDS DB by Protein ID:ENSP00000358582
Original member Current member NCBI NM_001253852.3 NP_001240781.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001253852.3Link to Protein Sequence:NP_001240781.1Re-query CCDS DB by Nucleotide ID:NM_001253852Re-query CCDS DB by Protein ID:NP_001240781Link to BLAST:NP_001240781.1
Original member Current member NCBI NM_006594.5 NP_006585.2 Accepted alive Link to Nucleotide Sequence:NM_006594.5Link to Protein Sequence:NP_006585.2Re-query CCDS DB by Nucleotide ID:NM_006594Re-query CCDS DB by Protein ID:NP_006585Link to BLAST:NP_006585.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001240781.1 739 Q9Y6B7-1 739 100% 0 0
NP_006585.2 739 Q9Y6B7-1 739 100% 0 0

Chromosomal Locations for CCDS 865.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 113895065 113895492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113895757 113896038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113896258 113896465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113897840 113897943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113898718 113898801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113899904 113900400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113901236 113901383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113901755 113901885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113902638 113902862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113904605 113904717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2220 nt):
ATGCCGTACCTTGGCTCCGAGGACGTGGTGAAGGAGCTGAAGAAGGCTCTGTGCAATCCTCACATTCAAG
CTGATAGGCTGCGCTACCGGAATGTCATCCAGCGAGTGATTAGGTACATGACTCAAGGCTTGGACATGTC
TGGTGTTTTTATGGAAATGGTGAAGGCCAGTGCCACTGTAGATATTGTCCAGAAGAAGTTGGTTTATCTG
TACATGTGCACATATGCTCCCCTGAAACCAGATCTGGCTCTCCTGGCCATCAATACGCTGTGCAAAGACT
GCTCAGACCCCAATCCAATGGTGCGAGGGCTGGCGTTACGGAGCATGTGTAGCCTCAGGATGCCTGGTGT
GCAGGAGTATATACAACAGCCTATTCTCAATGGTCTGCGGGATAAGGCTTCATATGTCAGGAGAGTGGCA
GTCCTTGGATGTGCCAAGATGCATAATCTTCATGGAGACTCTGAAGTAGATGGTGCCCTGGTAAATGAAT
TATACAGTTTGCTGCGTGACCAGGATCCAATTGTAGTTGTGAACTGCTTGAGGTCTCTAGAGGAAATTCT
GAAACAGGAAGGAGGCGTTGTCATCAATAAGCCCATTGCTCACCATCTCTTAAATCGAATGTCAAAACTG
GACCAATGGGGCCAGGCTGAAGTATTGAACTTTCTGCTACGCTACCAACCCCGCAGTGAGGAAGAACTAT
TTGACATTCTCAATCTGTTGGATAGTTTCCTCAAGAGCAGTAGCCCAGGTGTGGTGATGGGAGCTACCAA
ACTTTTTCTGATCTTGGCAAAAATGTTTCCCCACGTACAAACTGATGTCCTTGTGCGGGTCAAGGGACCT
TTGCTAGCTGCCTGTTCTTCAGAGAGCCGTGAGCTCTGTTTTGTTGCTCTTTGTCATGTACGCCAGATCT
TGCATAGTTTACCAGGTCACTTTAGCAGCCACTACAAAAAGTTTTTTTGCTCCTACTCGGAGCCCCACTA
CATCAAACTACAGAAAGTGGAGGTGCTGTGTGAACTGGTGAACGATGAGAATGTGCAGCAGGTGCTAGAG
GAGCTTCGAGGGTACTGCACGGATGTGTCTGCGGACTTTGCACAGGCTGCCATCTTTGCCATAGGTGGCA
TTGCCAGGACTTACACAGATCAATGTGTTCAGATTTTAACAGAGTTGCTGGGTCTTCGACAAGAGCACAT
TACCACAGTGGTGGTGCAGACTTTCCGAGACCTGGTTTGGTTGTGTCCTCAGTGTACTGAAGCTGTATGT
CAGGCCCTGCCCGGCTGTGAAGAGAACATTCAAGATAGTGAGGGGAAGCAAGCACTTATTTGGCTACTTG
GTGTCCATGGGGAAAGAATTCCTAATGCTCCTTATGTGTTAGAGGACTTTGTTGAGAATGTGAAGTCGGA
AACATTTCCAGCTGTTAAGATGGAGCTGCTCACTGCTTTGCTGCGCCTTTTCCTCTCCCGACCTGCTGAG
TGCCAGGACATGCTAGGACGTTTGTTGTATTACTGCATAGAGGAAGAAAAAGATATGGCTGTACGGGACC
GAGGTCTCTTCTATTATCGCCTCCTCTTAGTTGGCATTGATGAAGTTAAGCGGATTCTGTGTAGCCCTAA
ATCTGACCCTACTCTTGGACTTTTGGAGGATCCGGCAGAAAGACCTGTGAATAGCTGGGCCTCAGACTTC
AACACACTGGTGCCAGTGTATGGCAAAGCCCACTGGGCAACTATCTCTAAATGCCAGGGGGCAGAGCGTT
GTGACCCAGAGCTTCCTAAAACTTCATCCTTTGCCGCATCAGGACCCTTGATTCCTGAAGAGAACAAGGA
GAGGGTACAAGAACTCCCTGATTCTGGAGCCCTCATGCTAGTCCCCAATCGCCAGCTTACTGCTGATTAT
TTTGAGAAAACTTGGCTTAGCCTTAAAGTTGCTCATCAGCAAGTGTTGCCTTGGCGGGGAGAATTCCATC
CTGACACCCTCCAGATGGCTCTTCAAGTAGTGAACATCCAGACCATCGCAATGAGTAGGGCTGGGTCTCG
GCCATGGAAAGCATACCTCAGTGCTCAGGATGATACTGGCTGTCTGTTCTTAACAGAACTGCTATTGGAG
CCTGGAAACTCAGAAATGCAGATCTCTGTGAAACAAAATGAAGCAAGAACGGAGACGCTGAATAGTTTTA
TTTCTGTATTAGAAACTGTGATTGGAACAATTGAAGAAATAAAATCATAA

Translation (739 aa):
MPYLGSEDVVKELKKALCNPHIQADRLRYRNVIQRVIRYMTQGLDMSGVFMEMVKASATVDIVQKKLVYL
YMCTYAPLKPDLALLAINTLCKDCSDPNPMVRGLALRSMCSLRMPGVQEYIQQPILNGLRDKASYVRRVA
VLGCAKMHNLHGDSEVDGALVNELYSLLRDQDPIVVVNCLRSLEEILKQEGGVVINKPIAHHLLNRMSKL
DQWGQAEVLNFLLRYQPRSEEELFDILNLLDSFLKSSSPGVVMGATKLFLILAKMFPHVQTDVLVRVKGP
LLAACSSESRELCFVALCHVRQILHSLPGHFSSHYKKFFCSYSEPHYIKLQKVEVLCELVNDENVQQVLE
ELRGYCTDVSADFAQAAIFAIGGIARTYTDQCVQILTELLGLRQEHITTVVVQTFRDLVWLCPQCTEAVC
QALPGCEENIQDSEGKQALIWLLGVHGERIPNAPYVLEDFVENVKSETFPAVKMELLTALLRLFLSRPAE
CQDMLGRLLYYCIEEEKDMAVRDRGLFYYRLLLVGIDEVKRILCSPKSDPTLGLLEDPAERPVNSWASDF
NTLVPVYGKAHWATISKCQGAERCDPELPKTSSFAASGPLIPEENKERVQELPDSGALMLVPNRQLTADY
FEKTWLSLKVAHQQVLPWRGEFHPDTLQMALQVVNIQTIAMSRAGSRPWKAYLSAQDDTGCLFLTELLLE
PGNSEMQISVKQNEARTETLNSFISVLETVIGTIEEIKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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