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Report for CCDS86572.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86572.1 Public Homo sapiens 17 TMEM107 24 110 108 CCDS HistoryNCBI Gene:84314Re-query CCDS DB by CCDS ID:86572.1Re-query CCDS DB by GeneID:84314See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 86572.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000533070.5 ENSP00000436674.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000533070.5Link to Ensembl Protein Viewer:ENSP00000436674.1Re-query CCDS DB by Nucleotide ID:ENST00000533070Re-query CCDS DB by Protein ID:ENSP00000436674
Original member Current member NCBI NM_001351278.2 NP_001338207.1 Accepted alive Link to Nucleotide Sequence:NM_001351278.2Link to Protein Sequence:NP_001338207.1Re-query CCDS DB by Nucleotide ID:NM_001351278Re-query CCDS DB by Protein ID:NP_001338207Link to BLAST:NP_001338207.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001338207.1 139 Q6UX40-3 139 100% 0 0

Chromosomal Locations for CCDS 86572.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 8174203 8174272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8174541 8174616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8175757 8175875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8175959 8176026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8176200 8176286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (420 nt):
ATGGGCCGGGTCTCAGGGCTTGTGCCCTCTCGCTTCCTGACGCTCCTGGCGCATCTGGTGGTCGTCATCA
CCTTATTCTGGTCCCGGGACAGCAACATACAGGCCTGCCTGCCTCTCACGTTCACCCCCGAGGAGTATGA
CAAGCAGGACATTCATCCACTTCCTCTCTGCAGGCTGGTGGCCGCGCTCTCTGTCACCCTGGGCCTCTTT
GCAGTGGAGCTGGCCGGTTTCCTCTCAGGAGTCTCCATGTTCAACAGCACCCAGAGCCTCATCTCCATTG
GGGCTCACTGTAGTGCATCCGTGGCCCTGTCCTTCTTCATATTCGAGCGTTGGGAGTGCACTACGTATTG
TGCCCTTCCAGCTGTCACTGAAATGGCTTTATTCGTCACCGTCTTTGGGCTGAAAAAGAAACCCTTCTGA

Translation (139 aa):
MGRVSGLVPSRFLTLLAHLVVVITLFWSRDSNIQACLPLTFTPEEYDKQDIHPLPLCRLVAALSVTLGLF
AVELAGFLSGVSMFNSTQSLISIGAHCSASVALSFFIFERWECTTYCALPAVTEMALFVTVFGLKKKPF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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