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Report for CCDS8684.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8684.1 Public Homo sapiens 12 SLCO1B3 24 110 108 CCDS HistoryNCBI Gene:28234Re-query CCDS DB by CCDS ID:8684.1Re-query CCDS DB by GeneID:28234See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8684.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000261196.6 ENSP00000261196.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000261196.6Link to Ensembl Protein Viewer:ENSP00000261196.2Re-query CCDS DB by Nucleotide ID:ENST00000261196Re-query CCDS DB by Protein ID:ENSP00000261196
Original member Current member EBI ENST00000381545.8 ENSP00000370956.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000381545.8Link to Ensembl Protein Viewer:ENSP00000370956.4Re-query CCDS DB by Nucleotide ID:ENST00000381545Re-query CCDS DB by Protein ID:ENSP00000370956
Original member Current member NCBI NM_019844.4 NP_062818.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_019844.4Link to Protein Sequence:NP_062818.1Re-query CCDS DB by Nucleotide ID:NM_019844Re-query CCDS DB by Protein ID:NP_062818Link to BLAST:NP_062818.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062818.1 702 Q9NPD5-1 702 100% 0 0

Chromosomal Locations for CCDS 8684.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 20815739 20815822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 20855028 20855169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 20858439 20858571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 20861017 20861138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 20862412 20862558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 20862756 20862854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 20875235 20875477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 20877772 20877936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 20879436 20879631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 20880855 20881020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 20883418 20883602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 20898436 20898500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 20901350 20901467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 20916004 20916247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2109 nt):
ATGGACCAACATCAACATTTGAATAAAACAGCAGAGTCAGCATCTTCAGAGAAAAAGAAAACAAGACGCT
GCAATGGATTCAAGATGTTCTTGGCAGCCCTGTCATTCAGCTATATTGCTAAAGCACTAGGTGGAATCAT
TATGAAAATTTCCATCACTCAAATAGAAAGGAGATTTGACATATCCTCTTCTCTTGCTGGTTTAATTGAT
GGAAGCTTTGAAATTGGAAATTTGCTTGTGATTGTATTTGTAAGTTACTTTGGATCTAAACTACACAGAC
CGAAGTTAATTGGAATTGGTTGTCTCCTTATGGGAACTGGAAGTATTTTGACATCTTTACCACATTTCTT
CATGGGATATTATAGGTATTCTAAAGAAACCCATATTAATCCATCAGAAAATTCAACATCAAGTTTATCA
ACCTGTTTAATTAATCAAACCTTATCATTCAATGGAACATCACCTGAGATAGTAGAAAAAGATTGTGTAA
AGGAATCTGGGTCACACATGTGGATCTATGTCTTCATGGGGAATATGCTTCGTGGCATAGGGGAAACCCC
CATAGTACCATTGGGGATTTCATACATTGATGATTTTGCAAAAGAAGGACATTCTTCCTTGTATTTAGGT
AGTTTGAATGCAATAGGAATGATTGGTCCAGTCATTGGCTTTGCACTGGGATCTCTGTTTGCTAAAATGT
ACGTGGATATTGGATATGTAGATCTGAGCACTATCAGAATAACTCCTAAGGACTCTCGTTGGGTTGGAGC
TTGGTGGCTTGGTTTCCTTGTGTCTGGACTATTTTCCATTATTTCTTCCATACCATTTTTTTTCTTGCCG
AAAAATCCAAATAAACCACAAAAAGAAAGAAAAATTTCACTATCATTGCATGTGCTGAAAACAAATGATG
ATAGAAATCAAACAGCTAATTTGACCAACCAAGGAAAAAATGTTACCAAAAATGTGACTGGTTTTTTCCA
GTCTTTGAAAAGCATCCTTACCAATCCCCTGTATGTTATATTTCTGCTTTTGACATTGTTACAAGTAAGC
AGCTTTATTGGTTCTTTTACTTACGTCTTTAAATATATGGAGCAACAGTACGGTCAGTCTGCATCTCATG
CTAACTTTTTGTTGGGAATCATAACCATTCCTACGGTTGCAACTGGAATGTTTTTAGGAGGATTTATCAT
TAAAAAATTCAAATTGTCTTTAGTTGGAATTGCCAAATTTTCATTTCTTACTTCGATGATATCCTTCTTG
TTTCAACTTCTATATTTCCCTCTAATCTGCGAAAGCAAATCAGTTGCCGGCCTAACCTTGACCTATGATG
GAAATAATTCAGTGGCATCTCATGTAGATGTACCACTTTCTTATTGCAACTCAGAGTGCAATTGTGATGA
AAGTCAGTGGGAACCAGTCTGTGGGAACAATGGAATAACTTACCTGTCACCTTGTCTAGCAGGATGCAAA
TCCTCAAGTGGTATTAAAAAGCATACAGTGTTTTATAACTGTAGTTGTGTGGAAGTAACTGGTCTCCAGA
ACAGAAATTACTCAGCACACTTGGGTGAATGCCCAAGAGATAATACTTGTACAAGGAAATTTTTCATCTA
TGTTGCAATTCAAGTCATAAACTCTTTGTTCTCTGCAACAGGAGGTACCACATTTATCTTGTTGACTGTG
AAGATTGTTCAACCTGAATTGAAAGCACTTGCAATGGGTTTCCAGTCAATGGTTATAAGAACACTAGGAG
GAATTCTAGCTCCAATATATTTTGGGGCTCTGATTGATAAAACATGTATGAAGTGGTCCACCAACAGCTG
TGGAGCACAAGGGGCTTGTAGGATATATAATTCCGTATTTTTTGGAAGGGTCTACTTGGGCTTATCTATA
GCTTTAAGATTCCCAGCACTTGTTTTATATATTGTTTTCATTTTTGCTATGAAGAAAAAATTTCAAGGAA
AAGATACCAAGGCATCGGACAATGAAAGAAAAGTAATGGATGAAGCAAACTTAGAATTCTTAAATAATGG
TGAACATTTTGTACCTTCTGCTGGAACAGATAGTAAAACATGTAATTTGGACATGCAAGACAATGCTGCT
GCCAACTAA

Translation (702 aa):
MDQHQHLNKTAESASSEKKKTRRCNGFKMFLAALSFSYIAKALGGIIMKISITQIERRFDISSSLAGLID
GSFEIGNLLVIVFVSYFGSKLHRPKLIGIGCLLMGTGSILTSLPHFFMGYYRYSKETHINPSENSTSSLS
TCLINQTLSFNGTSPEIVEKDCVKESGSHMWIYVFMGNMLRGIGETPIVPLGISYIDDFAKEGHSSLYLG
SLNAIGMIGPVIGFALGSLFAKMYVDIGYVDLSTIRITPKDSRWVGAWWLGFLVSGLFSIISSIPFFFLP
KNPNKPQKERKISLSLHVLKTNDDRNQTANLTNQGKNVTKNVTGFFQSLKSILTNPLYVIFLLLTLLQVS
SFIGSFTYVFKYMEQQYGQSASHANFLLGIITIPTVATGMFLGGFIIKKFKLSLVGIAKFSFLTSMISFL
FQLLYFPLICESKSVAGLTLTYDGNNSVASHVDVPLSYCNSECNCDESQWEPVCGNNGITYLSPCLAGCK
SSSGIKKHTVFYNCSCVEVTGLQNRNYSAHLGECPRDNTCTRKFFIYVAIQVINSLFSATGGTTFILLTV
KIVQPELKALAMGFQSMVIRTLGGILAPIYFGALIDKTCMKWSTNSCGAQGACRIYNSVFFGRVYLGLSI
ALRFPALVLYIVFIFAMKKKFQGKDTKASDNERKVMDEANLEFLNNGEHFVPSAGTDSKTCNLDMQDNAA
AN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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