NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS87011.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87011.1 Public Homo sapiens 22 GSTT4 24 110 108 CCDS HistoryNCBI Gene:25774Re-query CCDS DB by CCDS ID:87011.1Re-query CCDS DB by GeneID:25774See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 87011.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000621179.6 ENSP00000492273.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000621179.6Link to Ensembl Protein Viewer:ENSP00000492273.1Re-query CCDS DB by Nucleotide ID:ENST00000621179Re-query CCDS DB by Protein ID:ENSP00000492273
Original member Current member NCBI NM_001358664.2 NP_001345593.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001358664.2Link to Protein Sequence:NP_001345593.1Re-query CCDS DB by Nucleotide ID:NM_001358664Re-query CCDS DB by Protein ID:NP_001345593Link to BLAST:NP_001345593.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001345593.1 241 A0A1W2PR19 241 100% 0 0

Chromosomal Locations for CCDS 87011.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 23998542 23998739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 24000075 24000251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 24001175 24001325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 24003760 24003847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 24005245 24005356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (726 nt):
ATGGCACTGGAGCTCTACATGGACCTGCTGTCAGCACCCTGCCGTGCCGTCTACATCTTCTCGAAGAAGC
ATGACATCCAGTTCAACTTTCAGTTTGTGGATCTGCTGAAAGGTCACCACCACAGCAAAGGATACATTGA
CATCAACCCCCTCAGGAAGCTGCCCAGCCTCAAAGATGGGAAATTTATCTTAAGTGAAAGCGCGGCCATC
CTTTACTACCTGTGCCGCAAGTACAGCGCACCATCGCACTGGTGCCCGCCAGACCCGCACGCACGTGCCC
GTGTGGATGAGTTCGTGGCTTGGCAACACACGGCCTTTCAGCTGCCCATGAAGAAGATAGTCTGGCTCAA
GTTGCTGATCCCAAAGATAACAGGGGAGGAAGTTTCAGCTGAGAAGATGGAGCATGCAGTGGAAGAGGTG
AAGAACAGCCTGCAGCTCTTTGAGGAGTATTTTCTGCAGGATAAGATGTTCATCACCGGGAACCAAATCT
CACTGGCTGACCTGGTGGCCGTGGTGGAGATGATGCAGCCCATGGCAGCCAACTATAATGTCTTCCTCAA
CAGCTCCAAGCTAGCTGAGTGGCGTATGCAGGTGGAGCTGAATATTGGCTCTGGCCTCTTTAGGGAGGCC
CATGATCGACTAATGCAGTTGGCCGACTGGGACTTTTCAACATTGGATTCAATGGTCAAGGAGAATATTT
CTGAGTTGCTGAAGAAGAGCAGGTGA

Translation (241 aa):
MALELYMDLLSAPCRAVYIFSKKHDIQFNFQFVDLLKGHHHSKGYIDINPLRKLPSLKDGKFILSESAAI
LYYLCRKYSAPSHWCPPDPHARARVDEFVAWQHTAFQLPMKKIVWLKLLIPKITGEEVSAEKMEHAVEEV
KNSLQLFEEYFLQDKMFITGNQISLADLVAVVEMMQPMAANYNVFLNSSKLAEWRMQVELNIGSGLFREA
HDRLMQLADWDFSTLDSMVKENISELLKKSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH