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Report for CCDS87105.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87105.1 Public Homo sapiens 3 TMF1 24 110 108 CCDS HistoryNCBI Gene:7110Re-query CCDS DB by CCDS ID:87105.1Re-query CCDS DB by GeneID:7110See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87105.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000646708.1 ENSP00000494067.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000646708.1Link to Ensembl Protein Viewer:ENSP00000494067.1Re-query CCDS DB by Nucleotide ID:ENST00000646708Re-query CCDS DB by Protein ID:ENSP00000494067
Original member Current member NCBI NM_001363879.1 NP_001350808.1 Accepted alive Link to Nucleotide Sequence:NM_001363879.1Link to Protein Sequence:NP_001350808.1Re-query CCDS DB by Nucleotide ID:NM_001363879Re-query CCDS DB by Protein ID:NP_001350808Link to BLAST:NP_001350808.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001350808.1 1096 P82094-2 1096 100% 0 0

Chromosomal Locations for CCDS 87105.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 69023177 69023320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 69024055 69024180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 69025560 69025712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 69025996 69026097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 69027900 69027992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 69028226 69028295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 69029815 69030007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 69033548 69033704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 69035023 69035115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 69038564 69038720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 69038843 69039009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 69039551 69039693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 69042807 69042912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 69043750 69043876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 69044492 69044595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 69047349 69048562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 69051945 69052086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3291 nt):
ATGAGTTGGTTCAACGCCTCCCAGCTCTCCAGCTTCGCTAAGCAGGCCCTGTCCCAGGCCCAGAAGTCTA
TTGACAGGGTTCTGGACATCCAGGAAGAGGAGCCGAGCATCTGGGCCGAGACCATTCCGTATGGAGAGCC
GGGAATAAGTTCCCCTGTCAGTGGAGGATGGGATACTTCAACCTGGGGGTTGAAATCAAACACTGAACCT
CAGAGTCCACCAATAGCCTCTCCTAAAGCAATCACAAAGCCAGTTCGGAGGACTGTGGTCGATGAATCTG
AAAATTTCTTCAGTGCCTTTCTCTCGCCAACTGATGTCCAGACCATTCAGAAGAGTCCAGTGGTATCAAA
ACCTCCAGCAAAATCACAACGACCAGAAGAAGAAGTGAAAAGCAGCTTACATGAATCCTTGCACATTGGC
CAGTCAAGAACTCCTGAAACAACTGAATCACAAGTAAAAGACTCTTCTTTGTGTGTTTCAGGGGAAACTC
TGGCAGCAGGTACTTCATCACCTAAAACTGAAGGCAAGCACGAAGAAACTGTTAATAAAGAATCGGATAT
GAAGGTGCCAACTGTAAGTTTGAAAGTATCTGAAAGTGTAATTGATGTGAAAACAACTATGGAAAGTATA
TCTAATACGTCTACGCAGTCTCTCACAGCAGAAACAAAGGACATAGCTTTGGAACCTAAGGAACAAAAAC
ATGAAGACAGGCAGAGCAATACACCTTCTCCTCCTGTTAGTACCTTTTCATCAGGTACTTCTACCACCAG
TGATATTGAAGTTTTAGATCATGAAAGTGTAATAAGTGAGAGCTCAGCGAGCTCGAGACAAGAGACTACA
GATTCAAAATCAAGTCTTCACTTGATGCAGACATCTTTTCAGCTTCTCTCTGCATCTGCTTGTCCTGAAT
ATAATCGTTTAGATGATTTCCAAAAACTCACTGAGAGTTGCTGTTCATCTGATGCTTTTGAAAGAATAGA
CTCATTTAGTGTACAGTCATTAGATAGCCGGAGTGTAAGTGAAATCAATTCAGATGATGAATTGTCAGGC
AAGGGATATGCTTTAGTGCCTATTATAGTTAATTCTTCAACTCCAAAGTCTAAAACAGTTGAATCTGCTG
AAGGAAAATCTGAAGAAGTAAATGAAACATTAGTTATACCCACTGAGGAAGCAGAAATGGAAGAAAGTGG
ACGAAGTGCAACTCCTGTTAACTGTGAACAGCCTGATATCTTGGTTTCTTCCACACCAATAAATGAAGGA
CAGACTGTGTTAGACAAGGTGGCTGAGCAGTGTGAACCTGCTGAAAGTCAGCCAGAAGCACTTTCTGAGA
AGGAAGATGTTTGCAAGGTAACTCTAACAGTTGAATTTCTGAATGAAAAGCTGGAAAAAAGGGAGGCTCA
GTTATTATCTCTTAGTAAGGAAAAAGCACTTCTAGAAGAAGCTTTTGATAACCTGAAAGATGAAATGTTC
AGAGTGAAAGAAGAAAGCAGTAGCATTTCTTCCTTGAAAGATGAGTTTACTCAAAGAATTGCAGAAGCAG
AAAAGAAAGTTCAACTAGCCTGCAAAGAGAGAGATGCTGCTAAAAAGGAAATCAAAAACATAAAAGAAGA
ACTTGCCACTAGATTAAATAGTAGTGAAACTGCAGACCTTTTGAAAGAGAAAGATGAGCAGATCCGAGGG
TTAATGGAAGAAGGAGAAAAACTTTCAAAACAGCAGCTGCACAATTCTAACATCATCAAGAAATTAAGAG
CTAAAGACAAGGAGAATGAAAATATGGTTGCAAAGCTGAACAAAAAAGTTAAAGAGCTAGAAGAGGAGTT
GCAGCATTTGAAACAGGTCCTTGATGGCAAAGAAGAGGTTGAGAAACAACATAGAGAAAATATTAAAAAA
CTAAATTCCATGGTAGAACGCCAAGAGAAAGATCTTGGCCGTCTTCAGGTAGACATGGATGAACTTGAAG
AAAAGAACCGAAGTATTCAGGCTGCCCTGGATAGTGCATACAAAGAACTTACTGATCTTCACAAAGCCAA
TGCTGCAAAGGATAGTGAGGCACAGGAAGCTGCTCTGAGCCGTGAAATGAAAGCTAAAGAAGAACTTTCT
GCAGCATTAGAGAAGGCCCAAGAAGAAGCCCGTCAGCAGCAAGAAACATTAGCCATTCAAGTGGGGGACC
TTAGGCTTGCATTGCAGCGTACAGAACAAGCGGCTGCCAGAAAGGAGGATTATTTACGCCATGAGATCGG
TGAACTTCAGCAGAGACTCCAGGAAGCAGAGAATCGAAACCAGGAACTGAGTCAAAGTGTTTCATCAACA
ACAAGACCATTGCTTCGACAAATAGAAAATTTGCAAGCAACCCTGGGATCCCAGACATCGTCGTGGGAGA
AATTAGAGAAGAATCTTTCTGATAGGCTTGGTGAATCCCAGACCTTGCTGGCAGCAGCAGTTGAGAGAGA
ACGTGCAGCTACAGAAGAACTCCTTGCTAACAAAATTCAGATGTCTTCCATGGAGTCACAGAATTCTCTT
TTAAGACAGGAAAACAGTAGATTTCAAGCCCAGCTAGAATCAGAGAAAAATAGGCTGTGTAAACTGGAGG
ATGAGAACAATAGGTACCAGGTTGAATTGGAAAACCTAAAAGATGAATATGTAAGAACACTTGAAGAGAC
GAGGAAAGAAAAGACATTGTTGAATAGTCAGTTAGAAATGGAAAGAATGAAAGTTGAACAAGAAAGGAAG
AAAGCCATTTTTACTCAAGAAACAATAAAAGAAAAGGAACGCAAGCCATTTTCTGTTTCTAGCACTCCCA
CCATGTCACGCTCAAGTTCAATAAGTGGTGTTGATATGGCAGGACTACAGACATCTTTTCTGTCTCAGGA
TGAGTCTCATGATCACTCATTTGGACCAATGCCTATATCAGCAAATGGAAGCAATCTTTATGATGCTGTA
AGGATGGGAGCAGGATCAAGCATAATTGAAAACCTACAGTCTCAGCTAAAGCTAAGGGAAGGGGAAATCA
CTCATTTACAGCTAGAAATTGGCAATCTAGAAAAAACTCGATCAATAATGGCTGAAGAACTAGTTAAATT
AACAAATCAAAATGATGAACTTGAAGAGAAGGTGAAGGAGATACCCAAACTTAGAACTCAGCTAAGAGAT
TTGGATCAAAGGTACAACACTATTCTGCAGATGTATGGAGAAAAAGCAGAAGAGGCAGAAGAACTTCGAT
TAGATCTCGAAGATGTAAAAAATATGTACAAAACTCAAATAGATGAACTTTTAAGACAAAGTCTCAGTTA
A

Translation (1096 aa):
MSWFNASQLSSFAKQALSQAQKSIDRVLDIQEEEPSIWAETIPYGEPGISSPVSGGWDTSTWGLKSNTEP
QSPPIASPKAITKPVRRTVVDESENFFSAFLSPTDVQTIQKSPVVSKPPAKSQRPEEEVKSSLHESLHIG
QSRTPETTESQVKDSSLCVSGETLAAGTSSPKTEGKHEETVNKESDMKVPTVSLKVSESVIDVKTTMESI
SNTSTQSLTAETKDIALEPKEQKHEDRQSNTPSPPVSTFSSGTSTTSDIEVLDHESVISESSASSRQETT
DSKSSLHLMQTSFQLLSASACPEYNRLDDFQKLTESCCSSDAFERIDSFSVQSLDSRSVSEINSDDELSG
KGYALVPIIVNSSTPKSKTVESAEGKSEEVNETLVIPTEEAEMEESGRSATPVNCEQPDILVSSTPINEG
QTVLDKVAEQCEPAESQPEALSEKEDVCKVTLTVEFLNEKLEKREAQLLSLSKEKALLEEAFDNLKDEMF
RVKEESSSISSLKDEFTQRIAEAEKKVQLACKERDAAKKEIKNIKEELATRLNSSETADLLKEKDEQIRG
LMEEGEKLSKQQLHNSNIIKKLRAKDKENENMVAKLNKKVKELEEELQHLKQVLDGKEEVEKQHRENIKK
LNSMVERQEKDLGRLQVDMDELEEKNRSIQAALDSAYKELTDLHKANAAKDSEAQEAALSREMKAKEELS
AALEKAQEEARQQQETLAIQVGDLRLALQRTEQAAARKEDYLRHEIGELQQRLQEAENRNQELSQSVSST
TRPLLRQIENLQATLGSQTSSWEKLEKNLSDRLGESQTLLAAAVERERAATEELLANKIQMSSMESQNSL
LRQENSRFQAQLESEKNRLCKLEDENNRYQVELENLKDEYVRTLEETRKEKTLLNSQLEMERMKVEQERK
KAIFTQETIKEKERKPFSVSSTPTMSRSSSISGVDMAGLQTSFLSQDESHDHSFGPMPISANGSNLYDAV
RMGAGSSIIENLQSQLKLREGEITHLQLEIGNLEKTRSIMAEELVKLTNQNDELEEKVKEIPKLRTQLRD
LDQRYNTILQMYGEKAEEAEELRLDLEDVKNMYKTQIDELLRQSLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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