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Report for CCDS87368.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87368.1 Public Homo sapiens 6 CAP2 24 110 108 CCDS HistoryNCBI Gene:10486Re-query CCDS DB by CCDS ID:87368.1Re-query CCDS DB by GeneID:10486See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87368.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000489374.5 ENSP00000417705.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000489374.5Link to Ensembl Protein Viewer:ENSP00000417705.1Re-query CCDS DB by Nucleotide ID:ENST00000489374Re-query CCDS DB by Protein ID:ENSP00000417705
Original member Current member NCBI NM_001363533.2 NP_001350462.1 Accepted alive Link to Nucleotide Sequence:NM_001363533.2Link to Protein Sequence:NP_001350462.1Re-query CCDS DB by Nucleotide ID:NM_001363533Re-query CCDS DB by Protein ID:NP_001350462Link to BLAST:NP_001350462.1

Chromosomal Locations for CCDS 87368.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 17421556 17421676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17426590 17426690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17462996 17463073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17539269 17539458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17540973 17541148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17542837 17542960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17543061 17543143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17551464 17551604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17556359 17556442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1098 nt):
ATGGCCAACATGCAGGGACTGGTGGAAAGACTGGAACGAGCTGTCAGCCGCCTGGAGTCGCTGTCTGCAG
AGTCCCACAGGCCCCCTGGGAACTGCGGGGAAGTCAATGGTGTCATTGCAGGTGTGGCACCCTCCGTGGA
AGCCTTTGACAAGCTGATGGACAGTATGGTGGCCGAGTTTTTAAAGAACAGTAGGATCCTTGCTGGGGAC
GTGGAGACCCATGCAGAAATGGTGCACAGTGCTTTCCAGGCCCAGCGGGCTTTCCTTCTGATGGCCTCTC
AGTACCAACAACCCCACGAGGGTCCTGTAGCATCCACAGTATCAGCGTTTTCTGTCCTCTCCTCTGGGCC
TGGCCTTCCTCCACCCCCTCCTCCTCTGCCTCCTCCAGGGCCACCTCCACTTTTCGAGAATGAAGGCAAA
AAAGAGGAATCTTCTCCTTCACGCTCAGCTTTATTTGCCCAACTTAACCAGGGAGAAGCAATTACAAAAG
GGCTCCGCCATGTCACAGATGACCAGAAGACATACAAAAATCCCAGCCTGCGGGCTCAAGGAGGGCAAAC
TCAATCTCCCACCAAAAGTCACACTCCAAGTCCCACATCTCCTAAATCTTATCCTTCTCAAAAACATGCC
CCAGTGTTGGAGTTGGAAGGAAAGAAATGGAGAGTGGAGTACCAAGAGGACAGGAATGACCTTGTGATTT
CAGAGACTGAGCTGAAACAAGTGGCTTACATTTTCAAATGCGAAAAATCAACTATTCAGATAAAAGGGAA
AGTAAACTCCATTATAATTGACAACTGTAAAAAACTCGGCCTGGTGTTTGACAATGTGGTGGGCATTGTG
GAAGTGATCAACTCCCAGGACATTCAAATCCAGGTAATGGGGAGAGTGCCAACAATTTCCATTAATAAGA
CAGAAGGTTGCCACATATACCTCAGTGAAGATGCATTAGACTGTGAGATCGTGAGCGCCAAGTCATCTGA
AATGAACATACTTATCCCTCAGGATGGTGATTATAGAGAATTTCCCATTCCTGAACAGTTCAAGACAGCA
TGGGATGGATCCAAGTTAATCACTGAACCTGCAGAAATTATGGCCTAA

Translation (365 aa):
MANMQGLVERLERAVSRLESLSAESHRPPGNCGEVNGVIAGVAPSVEAFDKLMDSMVAEFLKNSRILAGD
VETHAEMVHSAFQAQRAFLLMASQYQQPHEGPVASTVSAFSVLSSGPGLPPPPPPLPPPGPPPLFENEGK
KEESSPSRSALFAQLNQGEAITKGLRHVTDDQKTYKNPSLRAQGGQTQSPTKSHTPSPTSPKSYPSQKHA
PVLELEGKKWRVEYQEDRNDLVISETELKQVAYIFKCEKSTIQIKGKVNSIIIDNCKKLGLVFDNVVGIV
EVINSQDIQIQVMGRVPTISINKTEGCHIYLSEDALDCEIVSAKSSEMNILIPQDGDYREFPIPEQFKTA
WDGSKLITEPAEIMA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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