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Report for CCDS87419.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87419.1 Public Homo sapiens 6 USP45 24 110 108 CCDS HistoryNCBI Gene:85015Re-query CCDS DB by CCDS ID:87419.1Re-query CCDS DB by GeneID:85015See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87419.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000329966.10 ENSP00000330540.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000329966.10Link to Ensembl Protein Viewer:ENSP00000330540.5Re-query CCDS DB by Nucleotide ID:ENST00000329966Re-query CCDS DB by Protein ID:ENSP00000330540
Original member Current member EBI ENST00000472914.6 ENSP00000423993.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000472914.6Link to Ensembl Protein Viewer:ENSP00000423993.1Re-query CCDS DB by Nucleotide ID:ENST00000472914Re-query CCDS DB by Protein ID:ENSP00000423993
Original member Current member NCBI NM_001346033.2 NP_001332962.1 Accepted alive Link to Nucleotide Sequence:NM_001346033.2Link to Protein Sequence:NP_001332962.1Re-query CCDS DB by Nucleotide ID:NM_001346033Re-query CCDS DB by Protein ID:NP_001332962Link to BLAST:NP_001332962.1
Original member Current member NCBI NM_032929.3 NP_116318.2 Accepted alive Link to Nucleotide Sequence:NM_032929.3Link to Protein Sequence:NP_116318.2Re-query CCDS DB by Nucleotide ID:NM_032929Re-query CCDS DB by Protein ID:NP_116318Link to BLAST:NP_116318.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001332962.1 289 Q70EL2-2 289 99.654% 0 1
NP_116318.2 289 Q70EL2-2 289 99.654% 0 1

Chromosomal Locations for CCDS 87419.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 99482728 99482883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99488200 99488295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99488681 99488820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99503765 99503865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99507428 99507531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99508610 99508782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99510121 99510220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (870 nt):
ATGCGGGTGAAAGATCCAACTAAAGCTTTACCTGAGAAAGCCAAAAGAAGTAAAAGGCCTACTGTACCTC
ATGATGAAGACTCTTCAGATGATATTGCTGTAGGTTTAACTTGCCAACATGTAAGTCATGCTATCAGCGT
GAATCATGTAAAGAGAGCAATAGCTGAGAATCTGTGGTCAGTTTGCTCAGAATGTTTAAAAGAAAGAAGA
TTCTATGATGGGCAGCTAGTACTTACTTCTGATATTTGGTTGTGCCTCAAGTGTGGCTTCCAGGGATGTG
GTAAAAACTCAGAAAGCCAACATTCATTGAAGCACTTTAAGAGTTCCAGAACAGAGCCCCATTGTATTAT
AATTAATCTGAGCACATGGATTATATGGTGTTATGAATGTGATGAAAAATTATCAACGCATTGTAATAAG
AAGGTTTTGGCTCAGATAGTTGATTTTCTCCAGAAACATGCTTCTAAAACACAAACAAGTGCATTTTCTA
GAATCATGAAACTTTGTGAAGAAAAATGTGAAACAGATGAAATACAGAAGGGAGGAAAATGCAGAAATTT
ATCTGTAAGAGGAATTACAAATTTAGGAAATACTTGCTTTTTTAATGCAGTCATGCAGAACTTGGCACAG
ACTTATACTCTTACTGATCTGATGAATGAGATCAAAGAAAGTAGTACAAAACTCAAGATTTTTCCTTCCT
CAGACTCTCAGCTGGACCCATTGGTGGTGGAACTTTCAAGGCCTGGACCACTGACCTCAGCCTTGTTCCT
GTTTCTTCACAGCATGAAGGAGACTGAAAAAGGACCACTTTCTCCTAAAGTTCTTTTTAATCAGCTTTGT
CAGAAGTGGGTGCATCTACATTTAATATAA

Translation (289 aa):
MRVKDPTKALPEKAKRSKRPTVPHDEDSSDDIAVGLTCQHVSHAISVNHVKRAIAENLWSVCSECLKERR
FYDGQLVLTSDIWLCLKCGFQGCGKNSESQHSLKHFKSSRTEPHCIIINLSTWIIWCYECDEKLSTHCNK
KVLAQIVDFLQKHASKTQTSAFSRIMKLCEEKCETDEIQKGGKCRNLSVRGITNLGNTCFFNAVMQNLAQ
TYTLTDLMNEIKESSTKLKIFPSSDSQLDPLVVELSRPGPLTSALFLFLHSMKETEKGPLSPKVLFNQLC
QKWVHLHLI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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