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Report for CCDS87452.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87452.1 Public Homo sapiens 6 EPM2A 24 110 108 CCDS HistoryNCBI Gene:7957Re-query CCDS DB by CCDS ID:87452.1Re-query CCDS DB by GeneID:7957See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87452.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000611340.5 ENSP00000480268.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000611340.5Link to Ensembl Protein Viewer:ENSP00000480268.1Re-query CCDS DB by Nucleotide ID:ENST00000611340Re-query CCDS DB by Protein ID:ENSP00000480268
Original member Current member EBI ENST00000639465.1 ENSP00000491180.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000639465.1Link to Ensembl Protein Viewer:ENSP00000491180.1Re-query CCDS DB by Nucleotide ID:ENST00000639465Re-query CCDS DB by Protein ID:ENSP00000491180
Original member Current member EBI ENST00000638783.1 ENSP00000491338.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000638783.1Link to Ensembl Protein Viewer:ENSP00000491338.1Re-query CCDS DB by Nucleotide ID:ENST00000638783Re-query CCDS DB by Protein ID:ENSP00000491338
Original member Current member EBI ENST00000638778.1 ENSP00000491353.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000638778.1Link to Ensembl Protein Viewer:ENSP00000491353.1Re-query CCDS DB by Nucleotide ID:ENST00000638778Re-query CCDS DB by Protein ID:ENSP00000491353
Original member Current member EBI ENST00000639423.1 ENSP00000492701.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000639423.1Link to Ensembl Protein Viewer:ENSP00000492701.1Re-query CCDS DB by Nucleotide ID:ENST00000639423Re-query CCDS DB by Protein ID:ENSP00000492701
Original member Current member NCBI NM_001360064.2 NP_001346993.1 Accepted alive Link to Nucleotide Sequence:NM_001360064.2Link to Protein Sequence:NP_001346993.1Re-query CCDS DB by Nucleotide ID:NM_001360064Re-query CCDS DB by Protein ID:NP_001346993Link to BLAST:NP_001346993.1
Original member Current member NCBI NM_001360071.2 NP_001347000.1 Accepted alive Link to Nucleotide Sequence:NM_001360071.2Link to Protein Sequence:NP_001347000.1Re-query CCDS DB by Nucleotide ID:NM_001360071Re-query CCDS DB by Protein ID:NP_001347000Link to BLAST:NP_001347000.1
Original member Current member NCBI NM_001368131.1 NP_001355060.1 Accepted alive Link to Nucleotide Sequence:NM_001368131.1Link to Protein Sequence:NP_001355060.1Re-query CCDS DB by Nucleotide ID:NM_001368131Re-query CCDS DB by Protein ID:NP_001355060Link to BLAST:NP_001355060.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001346993.1 193 O95278-8 193 100% 0 0
NP_001347000.1 193 O95278-8 193 100% 0 0
NP_001355060.1 193 O95278-8 193 100% 0 0

Chromosomal Locations for CCDS 87452.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 145627416 145627693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 145635245 145635486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 145686122 145686183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (582 nt):
ATGAAGCACACAACAGACTTCTATTTTAATATTGCAGGCCACCAAGCCATGCATTATTCAAGAATTCTAC
CAAATATCTGGCTGGGTAGCTGCCCTCGTCAGGTGGAACATGTAACCATCAAACTGAAGCATGAATTGGG
GATTACAGCTGTAATGAATTTCCAGACTGAATGGGATATTGTACAGAATTCCTCAGGCTGTAACCGCTAC
CCAGAGCCCATGACTCCAGACACTATGATTAAACTATATAGGGAAGAAGGCTTGGCCTACATCTGGATGC
CAACACCAGATATGAGCACCGAAGGCCGAGTACAGATGCTGCCCCAGGCGGTGTGCCTGCTGCATGCGCT
GCTGGAGAAGGGACACATCGTGTACGTGCACTGCAACGCTGGGGTGGGCCGCTCCACCGCGGCTGTCTGC
GGCTGGCTCCAGTATGTGATGGGCTGGAATCTGAGGAAGGTGCAGTATTTCCTCATGGCCAAGAGGCCGG
CTGTCTACATTGACGAAGAGGCCTTGGCCCGGGCACAAGAAGATTTTTTCCAGAAATTTGGGAAGGTTCG
TTCTTCTGTGTGTAGCCTGTAG

Translation (193 aa):
MKHTTDFYFNIAGHQAMHYSRILPNIWLGSCPRQVEHVTIKLKHELGITAVMNFQTEWDIVQNSSGCNRY
PEPMTPDTMIKLYREEGLAYIWMPTPDMSTEGRVQMLPQAVCLLHALLEKGHIVYVHCNAGVGRSTAAVC
GWLQYVMGWNLRKVQYFLMAKRPAVYIDEEALARAQEDFFQKFGKVRSSVCSL


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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