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Report for CCDS87622.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87622.1 Public Homo sapiens 8 SNX31 24 110 108 CCDS HistoryNCBI Gene:169166Re-query CCDS DB by CCDS ID:87622.1Re-query CCDS DB by GeneID:169166See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87622.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000428383.6 ENSP00000405024.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000428383.6Link to Ensembl Protein Viewer:ENSP00000405024.2Re-query CCDS DB by Nucleotide ID:ENST00000428383Re-query CCDS DB by Protein ID:ENSP00000405024
Original member Current member NCBI NM_001363720.1 NP_001350649.1 Accepted alive Link to Nucleotide Sequence:NM_001363720.1Link to Protein Sequence:NP_001350649.1Re-query CCDS DB by Nucleotide ID:NM_001363720Re-query CCDS DB by Protein ID:NP_001350649Link to BLAST:NP_001350649.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001350649.1 341 Q8N9S9-2 341 100% 0 0

Chromosomal Locations for CCDS 87622.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 100573865 100573960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 100577019 100577075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 100584111 100584188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 100588866 100588979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 100596639 100596842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 100600349 100600441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 100608494 100608563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 100612000 100612087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 100612995 100613085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 100617620 100617730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 100618331 100618354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1026 nt):
ATGCTTGGAAATACTGAAAACTGGAATACATTTGACATCGCCACCAAGAAAGCTTATCTGGACATATTTC
TGCCCAATGAACAGAGTATTAGAATCGAAATTATAACATCAGACACTGCTGAAAGAGTCCTAGAGGTGGT
GTCACACAAAATTGGACTGTGTCGAGAGCTCTTGGGCTACTTCGGCCTCTTTCTCATTCGGTTTGGCAAG
GAGGGCAAGCTCTCTGTTGTGAAAAAATTGGCTGACTTTGAACTCCCTTATGTTAGTCTTGGAAGTTCTG
AGGTGGAAAACTGTAAGGTTGGACTCCGAAAGTGGTATATGGCTCCATCCCTCGACTCCGTGCTGATGGA
CTGCAGGGTGGCGGTAGATTTGCTCTACATGCAGGCAATACAGGACATTGAAAAAGGATGGGCCAAACCC
ACACAGGCACAGAGGCAGAAATTAGAAGCTTTCCAGAAAGAAGACAGTCAAACAAAGTTTTTGGAGCTGG
CCCGGGAGGTACGGCACTATGGATACCTGCAGCTGGATCCTTGTACCTGTGACTACCCAGAATCAGGCTC
TGGAGCTGTTCTTTCTGTTGGCAATAATGAGATCAGCTGCTGCATCACCCTGCCTGACAGCCAGACCCAG
GACATCGTTTTCCAGATGAGCAGGGTGAAGTGCTGGCAGGTCACTTTCCTTGGAACTCTGCTGGATACGG
ATGGGCCCCAGAGAACTCTCAACCAGAACTTAGAGCTCAGATTTCAATACAGTGAGGATAGTTGCTGGCA
GTGGTTTGTTATTTACACCAAACAGGCTTTTTTGCTGAGTAGCTGCTTGAAAAAGATGATCTCAGAAAAG
ATGGTAAAGCTAGCTGCTGAGAATACAGAAATGCAGATTGAAGTTCCGGAACAAAGCAAAAGTAAAAAAT
ACCACATTCAACAAAGCCAGCAGAAAGACTATTCTAGTTTTCTATCAAGAAAAAGCAAGATTAAGATAGC
TAAAGATGACTGCGTTTTTGGGAACATAAAGGAAGAAGATCTCTGA

Translation (341 aa):
MLGNTENWNTFDIATKKAYLDIFLPNEQSIRIEIITSDTAERVLEVVSHKIGLCRELLGYFGLFLIRFGK
EGKLSVVKKLADFELPYVSLGSSEVENCKVGLRKWYMAPSLDSVLMDCRVAVDLLYMQAIQDIEKGWAKP
TQAQRQKLEAFQKEDSQTKFLELAREVRHYGYLQLDPCTCDYPESGSGAVLSVGNNEISCCITLPDSQTQ
DIVFQMSRVKCWQVTFLGTLLDTDGPQRTLNQNLELRFQYSEDSCWQWFVIYTKQAFLLSSCLKKMISEK
MVKLAAENTEMQIEVPEQSKSKKYHIQQSQQKDYSSFLSRKSKIKIAKDDCVFGNIKEEDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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