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Report for CCDS87739.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87739.1 Public Homo sapiens X PPP1R2C 24 110 108 CCDS HistoryNCBI Gene:80316Re-query CCDS DB by CCDS ID:87739.1Re-query CCDS DB by GeneID:80316See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87739.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378131.4 ENSP00000490336.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000378131.4Link to Ensembl Protein Viewer:ENSP00000490336.1Re-query CCDS DB by Nucleotide ID:ENST00000378131Re-query CCDS DB by Protein ID:ENSP00000490336
Original member Current member NCBI NM_025210.2 NP_079486.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_025210.2Link to Protein Sequence:NP_079486.1Re-query CCDS DB by Nucleotide ID:NM_025210Re-query CCDS DB by Protein ID:NP_079486Link to BLAST:NP_079486.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079486.1 202 O14990 202 100% 0 0

Chromosomal Locations for CCDS 87739.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 42777471 42778079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (609 nt):
ATGTCAGCCTCCACCTCCTCGCACCGGCCCATCAAGGGGATCCTGAAAAACAAAAGCTCGTCGGGTTCCT
CGGTGGCGACTTCCGGTCAGCAGTCTGGAGGGACTATTCAAGATGTGAAGAGAAAGAAATCCCAAAAGTG
GGACGAATCAAGCATCCTTGCGGCACACCGCGCAACGTACAGAGATTACGATTTAATGAAGGCAAATGAG
CCCGGCACTTCCTACATGAGTGTGCAAGATAATGGGGAAGATTCAGTGCGCGATGTCGAAGGAGAAGATT
CAGTGCGTGGTGTCGAAGGAAAGGAAGCCACCGATGCTTCCGACCACAGCTGTGAGGTGGACGAGCAAGA
GAGCAGTGAGGCCTACATGAGAAAAATCCTCCTCCACAAACAGGAGAAAAAGCGGCAGTTCGAAATGAGA
AGAAGGCTTCACTACAACGAAGAATTGAACATCAAATTAGCTAGACAATTAATGTGGAAAGAGCTACAAA
GTGAAGATAATGAAAACGAAGAAACGCCACAAGGCACGAACGAAGAGAAGACTGCTGCGGAAGAATCAGA
GGAAGCTCCTCTGACCGGTGGACTGCAAACCCAGTCATGCGACCCTTAG

Translation (202 aa):
MSASTSSHRPIKGILKNKSSSGSSVATSGQQSGGTIQDVKRKKSQKWDESSILAAHRATYRDYDLMKANE
PGTSYMSVQDNGEDSVRDVEGEDSVRGVEGKEATDASDHSCEVDEQESSEAYMRKILLHKQEKKRQFEMR
RRLHYNEELNIKLARQLMWKELQSEDNENEETPQGTNEEKTAAEESEEAPLTGGLQTQSCDP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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