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Report for CCDS87929.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87929.1 Public Mus musculus 1 Zbtb18 23 108 98 CCDS HistoryNCBI Gene:30928Re-query CCDS DB by CCDS ID:87929.1Re-query CCDS DB by GeneID:30928See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87929.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000193480.1 ENSMUSP00000141663.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000193480.1Link to Ensembl Protein Viewer:ENSMUSP00000141663.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000193480Re-query CCDS DB by Protein ID:ENSMUSP00000141663
Original member NCBI NM_001355103.1 NP_001342032.1 Updated not alive Link to Nucleotide Sequence:NM_001355103.1Link to Protein Sequence:NP_001342032.1Re-query CCDS DB by Nucleotide ID:NM_001355103Re-query CCDS DB by Protein ID:NP_001342032
Current member NCBI NM_001355103.2 NP_001342032.1 Accepted alive Link to Nucleotide Sequence:NM_001355103.2Link to Protein Sequence:NP_001342032.1Re-query CCDS DB by Nucleotide ID:NM_001355103Re-query CCDS DB by Protein ID:NP_001342032Link to BLAST:NP_001342032.1

Chromosomal Locations for CCDS 87929.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 177444810 177444822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 177447089 177447776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 177447889 177447898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (711 nt):
ATGTGTCCTAAAGGTTATGAAGACAGTATGGAGTTTCCAGACCACAGCAGACATTTGCTGCAGTGTCTGA
GCGAGCAGAGGCACCAGGGCTTTCTTTGTGACTGCACTGTTCTGGTGGGAGATGCCCAGTTCCGGGCACA
CCGAGCTGTTCTGGCTTCATGCAGCATGTATTTCCACCTCTTTTACAAGGACCAGCTGGACAAAAGAGAC
ATTGTTCATCTGAACAGCGACATTGTGACAGCCCCCGCTTTCGCTCTCCTGCTTGAATTCATGTACGAAG
GGAAACTCCAGTTCAAAGACTTGCCCATTGAGGACGTGCTAGCAGCTGCCAGTTATCTCCACATGTATGA
CATTGTCAAAGTCTGCAAAAAGAAGCTGAAAGAGAAAGCTACCACAGAGGCGGACAGCACCAAAAAAGAA
GAAGATGCTTCAAGTTGTTCGGATAAAGTCGAGAGCCTCTCAGACGGCAGCAGCCACATGGCAGGTGACC
TGCCCAGTGATGAAGATGAAGGCGAAGATGACAAATTGAACATTCTACCCAGCAAAAGGGACTTGGCAGC
TGAGCCTGGGAACATGTGGATGCGATTGCCCTCAGACTCAGCAGGCATCCCCCAGGCTGGCGGAGAGGCC
GAGCCACACGCCACAGCAGCTGGAAAAACAGTAGCCAGCCCCTGCAGCTCAACAGAGTCTTTGTCCCAGA
GGACGTGCTGA

Translation (236 aa):
MCPKGYEDSMEFPDHSRHLLQCLSEQRHQGFLCDCTVLVGDAQFRAHRAVLASCSMYFHLFYKDQLDKRD
IVHLNSDIVTAPAFALLLEFMYEGKLQFKDLPIEDVLAAASYLHMYDIVKVCKKKLKEKATTEADSTKKE
EDASSCSDKVESLSDGSSHMAGDLPSDEDEGEDDKLNILPSKRDLAAEPGNMWMRLPSDSAGIPQAGGEA
EPHATAAGKTVASPCSSTESLSQRTC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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