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Report for CCDS87940.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87940.1 Public Mus musculus 1 Gpatch2 23 108 98 CCDS HistoryNCBI Gene:67769Re-query CCDS DB by CCDS ID:87940.1Re-query CCDS DB by GeneID:67769See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87940.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044812.11 ENSMUSP00000048979.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044812.11Link to Ensembl Protein Viewer:ENSMUSP00000048979.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000044812Re-query CCDS DB by Protein ID:ENSMUSP00000048979
Original member Current member NCBI NM_001357648.1 NP_001344577.1 Accepted alive Link to Nucleotide Sequence:NM_001357648.1Link to Protein Sequence:NP_001344577.1Re-query CCDS DB by Nucleotide ID:NM_001357648Re-query CCDS DB by Protein ID:NP_001344577Link to BLAST:NP_001344577.1

Chromosomal Locations for CCDS 87940.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 187215624 187215676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 187225503 187226219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 187230784 187230845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 187233131 187233313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 187233747 187233826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 187233954 187233986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1128 nt):
ATGTTTGGGGCCGACGGGCGCCCAGCGATCGGAACCGCCGCCGGGAAGAGCTGGCATTTCAGTCGAACAA
TGGAAGAGCTTGTTCACGATCTTGTCTCTGCACTGGAAGAGAGCTCTGAGCAAGCCCGAGGTGGATTTGC
TGAAACTGGAGAACATTCTCGAAATCTGTCTTGCCCTCTGAAACGCCAGGCCCGGAAAAGGAGAGGGAGG
AAGCGGAGATCCTACAATGTTCACCACCCGTGGGAGACAGGCCACTGCTTAAGTGAAGGCTCTGATTCTA
GTTTAGAAGAACCAAGTAAGGACTATAGAGAGAAGCACAGCAATAATAAAAAGGACCGCAGTGACTCTGA
TGACCAGATGTTAGTGGCGAAGCGGAGGCCATCTTCAAACCTAAGCAGCAGCGTTCGAGGTAAGCGGCTT
CTGTGGCACGAGTCTGACTTTGCCGTGGACAGCCTTGGGAACAGAACGCTGCGCCGGAGGAGGAAGGTGA
AGCGCATGGCCGTGGATCTCCCGCAGGACGTCTCCAGCAAAAGGACAATGACCCAGCTGCCAGAAGGCTG
CAGAGATCAGGACATGGACAATGATAGAGCCAGCCAGTATCCAGAGTTTACCCGGAAGAAAGTTAAGAAA
AGGAAGTTGAAAGGGATTAGGCCAGGACCGAAAACCCAGGAGGAAGGAGGAGTTTTGGAGAGTGAAGAAA
GAAGCCAGCCCAACAAGGACAGGATGGAGTACGAGGAACAGAAAGCCTCGGATGAGCTCAGGAGCGAAAG
TGACACCAGCAGTCTCAGCAGCACTGACGCGGGCTTGTTCACCAACGATGAGGGAAGACAAGGTGATGAT
GAGCAGAGTGACTGGTTCTATGAGAAGGAGTCAGGCGGAGCGTGCGGGATTGCTGGAGTCGTGCCCTGGT
GGGAAAAGGATGAGCCAGCAGAGCTGGACACCAACCTGCCCGACCCTGTGTTTGAGAGTATCTTAAGTGG
CTCCTTCCCTCTCATGTCCCATCCTGGCAGAGGAGGTTTCCAAGCTAGACTCAGTCGCCTTCATGGAACG
CCTTCAAAGAATATTAAAAAGTCTTCAGGGGCTCCACCTTCAATGGCTACAAACTGGACCAGTGAGATTC
CCCTATAA

Translation (375 aa):
MFGADGRPAIGTAAGKSWHFSRTMEELVHDLVSALEESSEQARGGFAETGEHSRNLSCPLKRQARKRRGR
KRRSYNVHHPWETGHCLSEGSDSSLEEPSKDYREKHSNNKKDRSDSDDQMLVAKRRPSSNLSSSVRGKRL
LWHESDFAVDSLGNRTLRRRRKVKRMAVDLPQDVSSKRTMTQLPEGCRDQDMDNDRASQYPEFTRKKVKK
RKLKGIRPGPKTQEEGGVLESEERSQPNKDRMEYEEQKASDELRSESDTSSLSSTDAGLFTNDEGRQGDD
EQSDWFYEKESGGACGIAGVVPWWEKDEPAELDTNLPDPVFESILSGSFPLMSHPGRGGFQARLSRLHGT
PSKNIKKSSGAPPSMATNWTSEIPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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