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Report for CCDS87941.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87941.1 Public Mus musculus 1 Gpatch2 23 108 98 CCDS HistoryNCBI Gene:67769Re-query CCDS DB by CCDS ID:87941.1Re-query CCDS DB by GeneID:67769See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87941.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110943.8 ENSMUSP00000106568.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110943.8Link to Ensembl Protein Viewer:ENSMUSP00000106568.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110943Re-query CCDS DB by Protein ID:ENSMUSP00000106568
Original member Current member NCBI NM_001357646.1 NP_001344575.1 Accepted alive Link to Nucleotide Sequence:NM_001357646.1Link to Protein Sequence:NP_001344575.1Re-query CCDS DB by Nucleotide ID:NM_001357646Re-query CCDS DB by Protein ID:NP_001344575Link to BLAST:NP_001344575.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344575.1 490 Q7TQC7-3 490 100% 0 0

Chromosomal Locations for CCDS 87941.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 187215624 187215676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 187225503 187226219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 187230784 187230845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 187233131 187233313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 187233747 187233826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 187304330 187304397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 187341487 187341575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 187348357 187348577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1473 nt):
ATGTTTGGGGCCGACGGGCGCCCAGCGATCGGAACCGCCGCCGGGAAGAGCTGGCATTTCAGTCGAACAA
TGGAAGAGCTTGTTCACGATCTTGTCTCTGCACTGGAAGAGAGCTCTGAGCAAGCCCGAGGTGGATTTGC
TGAAACTGGAGAACATTCTCGAAATCTGTCTTGCCCTCTGAAACGCCAGGCCCGGAAAAGGAGAGGGAGG
AAGCGGAGATCCTACAATGTTCACCACCCGTGGGAGACAGGCCACTGCTTAAGTGAAGGCTCTGATTCTA
GTTTAGAAGAACCAAGTAAGGACTATAGAGAGAAGCACAGCAATAATAAAAAGGACCGCAGTGACTCTGA
TGACCAGATGTTAGTGGCGAAGCGGAGGCCATCTTCAAACCTAAGCAGCAGCGTTCGAGGTAAGCGGCTT
CTGTGGCACGAGTCTGACTTTGCCGTGGACAGCCTTGGGAACAGAACGCTGCGCCGGAGGAGGAAGGTGA
AGCGCATGGCCGTGGATCTCCCGCAGGACGTCTCCAGCAAAAGGACAATGACCCAGCTGCCAGAAGGCTG
CAGAGATCAGGACATGGACAATGATAGAGCCAGCCAGTATCCAGAGTTTACCCGGAAGAAAGTTAAGAAA
AGGAAGTTGAAAGGGATTAGGCCAGGACCGAAAACCCAGGAGGAAGGAGGAGTTTTGGAGAGTGAAGAAA
GAAGCCAGCCCAACAAGGACAGGATGGAGTACGAGGAACAGAAAGCCTCGGATGAGCTCAGGAGCGAAAG
TGACACCAGCAGTCTCAGCAGCACTGACGCGGGCTTGTTCACCAACGATGAGGGAAGACAAGGTGATGAT
GAGCAGAGTGACTGGTTCTATGAGAAGGAGTCAGGCGGAGCGTGCGGGATTGCTGGAGTCGTGCCCTGGT
GGGAAAAGGATGAGCCAGCAGAGCTGGACACCAACCTGCCCGACCCTGTGTTTGAGAGTATCTTAAGTGG
CTCCTTCCCTCTCATGTCCCATCCTGGCAGAGGAGGTTTCCAAGCTAGACTCAGTCGCCTTCATGGAACG
CCTTCAAAGAATATTAAAAAGTCTTCAGGGGCTCCACCTTCAATGCTGTCTGCTCCTGGCCCTGGCAGTA
ACAAGAGGATGGTTCACTTCTCCCCAGACGCCCATCGCCATGAGCAGACAAGCATGCATTTAGGATCCTT
GTGCACAGGAGACATCAAAAGGAGAAGGAAAGCTGCCCCGTTGCCTGGACCCACTGCAGCAGGAATTGTG
GGTGAGAACGCCCAGCCGATCCTAGAGAGCAACATCGGGAACCGCATGCTTCAGAGTATGGGATGGACAC
CCGGGTCAGGCCTCGGGCGAGATGGCAGAGGGATCGCGGAGCCAGTTCAAGCCGTTCAGAGGCCGAAAGG
GTTAGGACTTGGATTTCCTCTACCAAAAAGCTCCCCCACCAGCCCTGCCCCCACATCAGGAAACCCTGCC
TGA

Translation (490 aa):
MFGADGRPAIGTAAGKSWHFSRTMEELVHDLVSALEESSEQARGGFAETGEHSRNLSCPLKRQARKRRGR
KRRSYNVHHPWETGHCLSEGSDSSLEEPSKDYREKHSNNKKDRSDSDDQMLVAKRRPSSNLSSSVRGKRL
LWHESDFAVDSLGNRTLRRRRKVKRMAVDLPQDVSSKRTMTQLPEGCRDQDMDNDRASQYPEFTRKKVKK
RKLKGIRPGPKTQEEGGVLESEERSQPNKDRMEYEEQKASDELRSESDTSSLSSTDAGLFTNDEGRQGDD
EQSDWFYEKESGGACGIAGVVPWWEKDEPAELDTNLPDPVFESILSGSFPLMSHPGRGGFQARLSRLHGT
PSKNIKKSSGAPPSMLSAPGPGSNKRMVHFSPDAHRHEQTSMHLGSLCTGDIKRRRKAAPLPGPTAAGIV
GENAQPILESNIGNRMLQSMGWTPGSGLGRDGRGIAEPVQAVQRPKGLGLGFPLPKSSPTSPAPTSGNPA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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