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Report for CCDS87949.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87949.1 Public Mus musculus 1 Cr2 23 108 98 CCDS HistoryNCBI Gene:12902Re-query CCDS DB by CCDS ID:87949.1Re-query CCDS DB by GeneID:12902See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 87949.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000210219.1 ENSMUSP00000147804.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000210219.1Link to Ensembl Protein Viewer:ENSMUSP00000147804.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000210219Re-query CCDS DB by Protein ID:ENSMUSP00000147804
Original member Current member NCBI NM_001368765.1 NP_001355694.1 Accepted alive Link to Nucleotide Sequence:NM_001368765.1Link to Protein Sequence:NP_001355694.1Re-query CCDS DB by Nucleotide ID:NM_001368765Re-query CCDS DB by Protein ID:NP_001355694Link to BLAST:NP_001355694.1

Chromosomal Locations for CCDS 87949.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 195141190 195141283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 195149972 195150044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 195150923 195150946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 195151572 195151757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 195154132 195154317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 195155125 195155517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 195155884 195155966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 195156280 195156358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 195157137 195157544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 195158060 195158136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 195158412 195158502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 195158578 195158754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 195159416 195159823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 195160270 195160352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 195160596 195160695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 195160779 195160967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 195163198 195163587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 195165039 195165124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 195165749 195165851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 195166217 195166390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 195168334 195168732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 195169259 195169344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 195169702 195169801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 195170991 195171170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 195176553 195176610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4227 nt):
ATGGGATCCTTGGGTTCGCTCTGGGTTTTCTTCACTCTCATCACTCCAGGAGTTCTTGGTCAGTGTAAGT
TGCTGCCAAAGTATTCTTTTGCTAAACCTTCTATTGTGAGTGATAAATCTGAGTTTGCCATTGGAACAAC
TTGGGAATACAAATGTCGCCCTGGGTATTTTAGGAAGTCATTTATTATCACCTGCTTAGAAACCTCCAAG
TGGTCAGATGCTCAGCAGTTCTGTAAACGTAAACCATGTATGAATCCTCAAGAACCCCTCCATGGTTCTG
TGCATATAAACACGGGTATCGAGTTTGGGTCAACAATTACGTATTCTTGTAATCAAGGATATCGACTCAT
TGGTGACTCGTCTGCTACATGTATTGTATCAGACAATACTGTAATGTGGGATAATGATATGCCTCTTTGT
GAATCTATTCCTTGTGAGTCACCTCCAGCCATCTCCAATGGAGACTTCTACAGCAGCAGCAGAGACAGCT
TTTTCTATGGGATGGTAGTAACTTATTATTGCCATACCGGAAAGAATAGGGAAAAACTGTTTGATCTGGT
GGGTGAGAAGTCAATATATTGTACCAGCAAAGACAATCAAGTTGGCATCTGGAATAGTCCACCTCCTCAG
TGTATTCCTAGAGTCAAGTGCCCAATGCCAGAAATTGAAAATGGACTAGTGGAGTCTGGATTTAAACACT
CCTTCTTCTTAAATGATACAGTAATATTTAAGTGCAAATCTGGCTTTACCATGAAAGGCAGCAGAATAGC
ATGGTGCCAGCCAAACAGCAAATGGAGCCCTCCATTGCCAACATGCTTCATGGGATGTCTACCACCTCAA
AATATCCTCCATGGTGATTATAACAAAAAGGATGAGTTCTTCTCTGTTGGCCAGAAAGTGTCATATAGCT
GTAACCCTGGCTATACTCTCATTGGAACTAACCTCGTGGAGTGTACATCCTTGGGAACCTGGAGCAATAC
AGTCCCGACATGTGAAGTGAAATCATGTGATGCAATTCCAAACCATCTTCTCCATGGCCGTGTGTTTCTT
CCCCCTAATCTCCAGCTTGGGGCAGAGGTTTCCTTTGTTTGTGACTTAGGGTTCCAGTTAAAAGGCAAAC
CTTCTAGTCAGTGTATCCCAGAAGGAGAGACAGTAATCTGGAATAATAAGTTTCCTGTCTGTGAACAGAT
TTCTTGTGACCCTCCTCCTGAAGTCAAAAATGCTCGGAAACCCTATTATTCTCTTCCCATAGTTCCTGGA
ACTGTTCTGAGGTACACTTGTTCACCTAGCTACCGCCTCATTGGAGAAAAGGCTATCTTTTGTATAAGTG
AAAATCAAGTGCATGCCACCTGGGATAAAGCTCCTCCTATATGTGAATCTGTGAATAAAACCATTTCTTG
CTCAGATCCCATAGTACCAGGGGGATTCATGAATAAAGGATCTAAGGCACCATTCAGACATGGTGATTCT
GTGACATTTACCTGTAAAGCCAACTTCACCATGAAAGGAAGCAAAACTGTCTGGTGCCAGGCAAATGAAA
TGTGGGGACCAACAGCTCTGCCAGTCTGTGAGAGTGATTTCCCTCTGGAGTGCCCATCACTTCCAACGAT
TCATAATGGACACCACACAGGACAGCATGTTGACCAGTTTGTTGCGGGGTTGTCTGTGACATACAGTTGT
GAACCTGGCTATTTGCTCACTGGAAAAAAGACAATTAAGTGCTTATCTTCAGGAGACTGGGATGGTGTCA
TCCCGACATGCAAAGAGGCCCAGTGTGAACATCCAGGAAAGTTTCCCAATGGGCAGGTAAAGGAACCTCT
GAGCCTTCAGGTTGGCACAACTGTGTACTTCTCCTGTAATGAAGGGTACCAATTACAAGGACAACCCTCT
AGTCAGTGTGTAATTGTTGAACAGAAAGCCATCTGGACTAAGAAGCCAGTATGTAAAGAAATTCTCTGCC
CACCACCTCCACCTGTTCGTAATGGAAGTCATACAGGCAGCTTTTCAGAAAATGTACCATATGGAAGCAC
AGTTACCTACACCTGTGACCCAAGCCCAGAGAAAGGCGTGAGCTTCACTCTTATTGGAGAGAAGACTATC
AATTGTACTACTGGTAGTCAGAAGACTGGGATCTGGAGTGGCCCTGCTCCATATTGTGTACTTTCAACTT
CTGCAGTTCTGTGTTTACAACCGAAGATCAAAAGAGGGCAAATATTATCTATTTTGAAAGATAGTTATTC
ATATAATGACACTGTGGCATTTTCTTGTGAACCTGGCTTCACCTTGAAGGGCAACAGGAGCATTCGATGC
AATGCTCATGGCACATGGGAGCCACCGGTACCAGTGTGTGAAAAAGGATGTCAGGCTCCTCCTAAAATTA
TCAATGGGCAAAAAGAAGATAGTTACTTGCTCAACTTTGACCCTGGTACATCCATAAGATATAGCTGTGA
CCCTGGCTATTTACTGGTGGGAGAGGACACTATACATTGCACCCCTGAGGGGAAGTGGACACCCATTACT
CCCCAGTGCACAGTTGCAGAGTGTAAGCCAGTAGGACCACATCTCTTTAAGAGGCCTCAGAATCAGTTTA
TTAGGACAGCTGTTAATTCTTCTTGTGATGAAGGGTTCCAGTTAAGTGAGAGTGCTTATCAACTGTGTCA
AGGTACAATTCCTTGGTTTATAGAAATCCGTCTTTGTAAAGAAATCACCTGCCCACCACCTCCTGTTATA
CACAACGGGACACATACATGGAGTTCCTCAGAAGATGTCCCATATGGAACTGTGGTCACATACATGTGCT
ATCCTGGGCCAGAGGAAGGCGTAAAATTCAAACTCATCGGGGAGCAAACCATCCACTGTACAAGTGACAG
CAGAGGAAGAGGCTCCTGGAGTAGCCCTGCTCCTCTCTGTAAACTTTCCCTCCCAGCTGTCCAGTGCACA
GACGTTCATGTTGAAAATGGAGTCAAGCTCACTGACAATAAAGCCCCATATTTCTACAATGATAGTGTGA
TGTTCAAGTGTGATGATGGATATATTTTGAGTGGAAGCAGTCAGATCCGGTGTAAAGCCAATAATACCTG
GGATCCTGAAAAACCACTTTGTAAAAAAGAAGGATGTGAGCCTATGAGAGTACATGGCCTTCCAGATGAT
TCACATATAAAACTAGTGAAAAGAACCTGTCAAAATGGGTACCAGTTGACTGGATATACTTATGAGAAGT
GTCAAAATGCTGAGAATGGGACTTGGTTTAAAAAGATTGAAGTTTGTACAGTTATTCTCTGTCAACCTCC
ACCAAAAATTGCAAATGGTGGTCACACAGGCATGATGGCAAAGCACTTCCTATATGGAAATGAAGTTTCT
TATGAATGTGATGAAGGGTTCTATCTTTTGGGAGAGAAAAGTTTGCAGTGCGTAAATGATTCTAAAGGTC
ATGGCTCTTGGAGTGGACCTCCACCACAATGCTTACAATCTTCTCCTCTAACTCATTGCCCCGATCCAGA
AGTCAAACATGGTTACAAACTCAATAAAACTCATTCTGCATTTTCTCATAATGACATAGTACATTTTGTC
TGCAATCAAGGCTTCATCATGAACGGCAGCCACTTGATAAGGTGTCATACTAATAACACATGGTTACCAG
GTGTACCAACTTGTATCAGAAAGGCTTCTTTAGGGTGTCAGTCTCCATCCACAATCCCCAATGGGAATCA
TACTGGTGGGAGTATAGCTCGATTTCCCCCTGGAATGTCAGTCATGTACAGTTGCTACCAAGGCTTCCTT
ATGGCTGGAGAGGCACGTCTTATCTGTACTCATGAGGGTACCTGGAGTCAACCTCCCCCTTTTTGCAAAG
AGGTAAACTGTAGCTTCCCTGAAGATACAAATGGAATCCAGAAGGGATTTCAACCTGGGAAAACCTATCG
ATTTGGGGCTACTGTGACTCTGGAATGTGAGGATGGGTATACCTTGGAGGGAAGTCCCCAGAGCCAGTGC
CAGGATGACAGCCAATGGAACCCTCCCTTGGCTCTTTGCAAATACCGGTCAACTATTCCTCTTATTTGTG
GTATTTCTGTGGGCTCAGCACTTATCATTTTGATGAGTGTCGGCTTCTGTATGATATTAAAACACAGAGA
AAGCAATTATTATACAAAGACAAGACCCAAAGAAGGAGCTCTTCATTTAGAAACACGAGAAGTATATTCT
ATTGATCCATATAACCCAGCAAGCTGA

Translation (1408 aa):
MGSLGSLWVFFTLITPGVLGQCKLLPKYSFAKPSIVSDKSEFAIGTTWEYKCRPGYFRKSFIITCLETSK
WSDAQQFCKRKPCMNPQEPLHGSVHINTGIEFGSTITYSCNQGYRLIGDSSATCIVSDNTVMWDNDMPLC
ESIPCESPPAISNGDFYSSSRDSFFYGMVVTYYCHTGKNREKLFDLVGEKSIYCTSKDNQVGIWNSPPPQ
CIPRVKCPMPEIENGLVESGFKHSFFLNDTVIFKCKSGFTMKGSRIAWCQPNSKWSPPLPTCFMGCLPPQ
NILHGDYNKKDEFFSVGQKVSYSCNPGYTLIGTNLVECTSLGTWSNTVPTCEVKSCDAIPNHLLHGRVFL
PPNLQLGAEVSFVCDLGFQLKGKPSSQCIPEGETVIWNNKFPVCEQISCDPPPEVKNARKPYYSLPIVPG
TVLRYTCSPSYRLIGEKAIFCISENQVHATWDKAPPICESVNKTISCSDPIVPGGFMNKGSKAPFRHGDS
VTFTCKANFTMKGSKTVWCQANEMWGPTALPVCESDFPLECPSLPTIHNGHHTGQHVDQFVAGLSVTYSC
EPGYLLTGKKTIKCLSSGDWDGVIPTCKEAQCEHPGKFPNGQVKEPLSLQVGTTVYFSCNEGYQLQGQPS
SQCVIVEQKAIWTKKPVCKEILCPPPPPVRNGSHTGSFSENVPYGSTVTYTCDPSPEKGVSFTLIGEKTI
NCTTGSQKTGIWSGPAPYCVLSTSAVLCLQPKIKRGQILSILKDSYSYNDTVAFSCEPGFTLKGNRSIRC
NAHGTWEPPVPVCEKGCQAPPKIINGQKEDSYLLNFDPGTSIRYSCDPGYLLVGEDTIHCTPEGKWTPIT
PQCTVAECKPVGPHLFKRPQNQFIRTAVNSSCDEGFQLSESAYQLCQGTIPWFIEIRLCKEITCPPPPVI
HNGTHTWSSSEDVPYGTVVTYMCYPGPEEGVKFKLIGEQTIHCTSDSRGRGSWSSPAPLCKLSLPAVQCT
DVHVENGVKLTDNKAPYFYNDSVMFKCDDGYILSGSSQIRCKANNTWDPEKPLCKKEGCEPMRVHGLPDD
SHIKLVKRTCQNGYQLTGYTYEKCQNAENGTWFKKIEVCTVILCQPPPKIANGGHTGMMAKHFLYGNEVS
YECDEGFYLLGEKSLQCVNDSKGHGSWSGPPPQCLQSSPLTHCPDPEVKHGYKLNKTHSAFSHNDIVHFV
CNQGFIMNGSHLIRCHTNNTWLPGVPTCIRKASLGCQSPSTIPNGNHTGGSIARFPPGMSVMYSCYQGFL
MAGEARLICTHEGTWSQPPPFCKEVNCSFPEDTNGIQKGFQPGKTYRFGATVTLECEDGYTLEGSPQSQC
QDDSQWNPPLALCKYRSTIPLICGISVGSALIILMSVGFCMILKHRESNYYTKTRPKEGALHLETREVYS
IDPYNPAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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