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Report for CCDS88076.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88076.1 Public Mus musculus 10 Mrpl42 23 108 98 CCDS HistoryNCBI Gene:67270Re-query CCDS DB by CCDS ID:88076.1Re-query CCDS DB by GeneID:67270See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88076.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000217777.1 ENSMUSP00000151315.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217777.1Link to Ensembl Protein Viewer:ENSMUSP00000151315.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217777Re-query CCDS DB by Protein ID:ENSMUSP00000151315
Original member Current member NCBI NM_001359477.1 NP_001346406.1 Accepted alive Link to Nucleotide Sequence:NM_001359477.1Link to Protein Sequence:NP_001346406.1Re-query CCDS DB by Nucleotide ID:NM_001359477Re-query CCDS DB by Protein ID:NP_001346406Link to BLAST:NP_001346406.1

Chromosomal Locations for CCDS 88076.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 95480960 95480977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 95493631 95493715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 95496824 95496887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 95500383 95500449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (234 nt):
ATGGCTGCGGCAGTAAAATGGGCGATATCAAACAGAACTATCTGGAAGCATTTACTTCCAATCCAAAACG
GAGCTTTGTCTAGTGCTTGTCACAAATCCACATACTCTTCTCTTCCGGATGACTACAATTGCCAGGTGGA
CCTCGCCTTGACAGCCGACGGCAGGACAATAGTGTGCTACCACCCTTCTGTGGACATCCCCTACGAACAC
ACCAAAGTATCACAATCGTCGTAA

Translation (77 aa):
MAAAVKWAISNRTIWKHLLPIQNGALSSACHKSTYSSLPDDYNCQVDLALTADGRTIVCYHPSVDIPYEH
TKVSQSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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