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Report for CCDS88146.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88146.1 Public Mus musculus 11 Gabrb2 23 108 98 CCDS HistoryNCBI Gene:14401Re-query CCDS DB by CCDS ID:88146.1Re-query CCDS DB by GeneID:14401See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88146.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000192403.1 ENSMUSP00000141868.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000192403.1Link to Ensembl Protein Viewer:ENSMUSP00000141868.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000192403Re-query CCDS DB by Protein ID:ENSMUSP00000141868
Original member Current member NCBI NM_001347314.3 NP_001334243.1 Accepted alive Link to Nucleotide Sequence:NM_001347314.3Link to Protein Sequence:NP_001334243.1Re-query CCDS DB by Nucleotide ID:NM_001347314Re-query CCDS DB by Protein ID:NP_001334243Link to BLAST:NP_001334243.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001334243.1 512 P63137-1 512 100% 0 0

Chromosomal Locations for CCDS 88146.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 42421350 42421426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 42421552 42421643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 42422581 42422648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 42487196 42487416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 42529412 42529494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 42591858 42591995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 42593797 42593949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 42597541 42597785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 42602115 42602228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 42626544 42626891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1539 nt):
ATGTGGAGAGTCCGGAAAAGGGGCTACTTTGGGATTTGGTCATTTCCCTTAATAATCGCCGCTGTCTGTG
CTCAGAGTGTCAATGACCCTAGTAATATGTCGCTGGTTAAAGAGACGGTGGACAGACTGTTGAAAGGCTA
TGACATTCGTCTGAGACCAGATTTTGGAGGTCCCCCTGTGGCCGTAGGAATGAACATTGATATTGCCAGC
ATTGATATGGTTTCTGAGGTCAATATGGACTATACCTTGACCATGTATTTTCAGCAAGCCTGGAGAGACA
AGAGGCTGTCTTACAATGTAATTCCTTTAAACTTGACTTTGGACAACCGAGTGGCAGACCAACTCTGGGT
GCCTGACACCTACTTCCTGAATGATAAGAAGTCATTTGTACATGGAGTGACTGTCAAAAACCGTATGATT
CGATTGCATCCCGATGGCACTGTCCTGTATGGCCTCAGAATCACAACTACGGCTGCCTGCATGATGGACC
TAAGGCGGTATCCACTGGATGAACAAAACTGTACATTGGAGATTGAAAGCTATGGCTACACAACTGATGA
CATTGAGTTTTACTGGCGCGGCGATGACAATGCAGTCACAGGAGTGACAAAGATTGAGCTTCCTCAGTTC
TCCATCGTAGATTATAAACTCATCACCAAGAAAGTTGTTTTCTCCACAGGTTCTTATCCCAGATTGTCCC
TAAGCTTTAAGCTGAAAAGGAACATTGGCTACTTCATCCTGCAGACATACATGCCATCAATTCTGATTAC
CATTCTCTCCTGGGTCTCCTTTTGGATTAACTATGATGCCTCTGCTGCACGGGTTGCATTAGGAATTACA
ACTGTCCTAACAATGACCACAATCAACACCCACCTCCGGGAAACTCTCCCTAAAATCCCCTATGTCAAAG
CCATTGACATGTACCTAATGGGGTGCTTTGTCTTCGTCTTTATGGCCCTTCTGGAATACGCTTTGGTCAA
CTACATCTTCTTTGGGAGAGGACCCCAGCGCCAAAAGAAAGCAGCTGAGAAAGCTGCTAATGCCAACAAT
GAGAAGATGCGCCTGGATGTCAACAAGATGTTTTATAAAGATATTAAACAAAATGGGACCCAGTATCGAT
CCTTGTGGGACCCTACTGGAGACCTCTCCCCAACTAGACGGACTACCAATTATGATTTCTCTCTGTATAC
GATGGACCCCCATGAGAACATCTTACTCAGCACGCTTGAGATAAAAAACGAGATGGCCACATCCGAAGCA
GTAATGGGACTTGGAGACCCCAGGAGCACAATGCTTGCCTATGATGCCTCCAGCATCCAGTATCGAAAAG
CTGGGCTGCCTAGGCATAGTTTTGGCCGCAACGCTCTGGAGCGACATGTGGCACAAAAGAAAAGTCGCCT
GAGGAGACGTGCCTCTCAACTGAAAATCACCATCCCCGACTTGACTGATGTGAATGCCATTGATCGGTGG
TCCCGCATTTTCTTCCCTGTGGTGTTTTCCTTCTTCAACATCGTCTATTGGCTTTATTATGTGAACTAA

Translation (512 aa):
MWRVRKRGYFGIWSFPLIIAAVCAQSVNDPSNMSLVKETVDRLLKGYDIRLRPDFGGPPVAVGMNIDIAS
IDMVSEVNMDYTLTMYFQQAWRDKRLSYNVIPLNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMI
RLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGDDNAVTGVTKIELPQF
SIVDYKLITKKVVFSTGSYPRLSLSFKLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGIT
TVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFMALLEYALVNYIFFGRGPQRQKKAAEKAANANN
EKMRLDVNKMFYKDIKQNGTQYRSLWDPTGDLSPTRRTTNYDFSLYTMDPHENILLSTLEIKNEMATSEA
VMGLGDPRSTMLAYDASSIQYRKAGLPRHSFGRNALERHVAQKKSRLRRRASQLKITIPDLTDVNAIDRW
SRIFFPVVFSFFNIVYWLYYVN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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