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Report for CCDS8833.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8833.1 Public Homo sapiens 12 KRT72 24 110 108 CCDS HistoryNCBI Gene:140807Re-query CCDS DB by CCDS ID:8833.1Re-query CCDS DB by GeneID:140807See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8833.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000293745.7 ENSP00000293745.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000293745.7Link to Ensembl Protein Viewer:ENSP00000293745.2Re-query CCDS DB by Nucleotide ID:ENST00000293745Re-query CCDS DB by Protein ID:ENSP00000293745
Original member Current member EBI ENST00000537672.6 ENSP00000441160.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000537672.6Link to Ensembl Protein Viewer:ENSP00000441160.2Re-query CCDS DB by Nucleotide ID:ENST00000537672Re-query CCDS DB by Protein ID:ENSP00000441160
Original member Current member NCBI NM_001146225.2 NP_001139697.1 Accepted alive Link to Nucleotide Sequence:NM_001146225.2Link to Protein Sequence:NP_001139697.1Re-query CCDS DB by Nucleotide ID:NM_001146225Re-query CCDS DB by Protein ID:NP_001139697Link to BLAST:NP_001139697.1
Original member Current member NCBI NM_080747.3 NP_542785.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_080747.3Link to Protein Sequence:NP_542785.1Re-query CCDS DB by Nucleotide ID:NM_080747Re-query CCDS DB by Protein ID:NP_542785Link to BLAST:NP_542785.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139697.1 511 Q14CN4-1 511 100% 0 0
NP_542785.1 511 Q14CN4-1 511 100% 0 0

Chromosomal Locations for CCDS 8833.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 52585982 52586172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52586946 52586980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52587631 52587851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52590836 52590961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52591464 52591628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52592396 52592491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52592892 52592952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52598898 52599112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52601027 52601452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1536 nt):
ATGAGCCGCCAACTGACCCATTTCCCCCGCGGGGAGCGCCTGGGCTTCAGCGGTTGCTCCGCGGTCCTCT
CTGGCGGGATCGGCAGCAGCTCCGCCTCATTCCGGGCCCGGGTCAAGGGCTCGGCCTCCTTTGGCAGCAA
GAGCCTCTCCTGCCTTGGGGGCAGCCGAAGCCTGGCGCTCAGCGCTGCTGCACGGCGGGGCGGCGGCCGC
CTGGGCGGCTTCGTGGGCACCGCCTTCGGCAGCGCCGGGCTGGGGCCCAAGTGTCCCTCCGTGTGCCCAC
CCGGGGGCATCCCTCAGGTCACCGTCAACAAGAGCCTCCTGGCCCCGCTCAACGTGGAGATGGACCCCGA
GATCCAGAGGGTGCGCGCCCAGGAGCGGGAGCAGATCAAGGCGCTAAACAACAAGTTCGCCTCCTTCATC
GACAAGGTGCGGTTCCTGGAGCAGCAGAATCAGGTGCTAGAGACCAAGTGGAACCTCCTACAGCAGCTGG
ACTTGAACAACTGCAGGAAGAACCTGGAGCCCATTTATGAGGGCTACATCAGCAACCTGCAGAAGCAGCT
GGAGATGCTGTCTGGGGACGGGGTGAGGCTGGATTCGGAGCTGAGGAACATGCAGGATTTGGTGGAGGAC
TACAAGAAGAGGTATGAGGTGGAGATTAACAGACGCACAGCTGCTGAGAATGAGTTTGTGGTGCTCAAGA
AGGACGTGGATGCTGCTTACATGAATAAGGTTGAGCTCCAGGCCAAGGTGGACTCCTTGACAGATGAGAT
TAAATTCTTCAAGTGCCTTTATGAAGGGGAGATCACTCAGATCCAGTCCCACATCAGCGACACGTCCATC
GTCCTGTCAATGGACAACAACCGGGATCTGGACCTGGACAGCATCATTGCCGAGGTCCGTGCCCAGTACG
AGGAGATTGCCCTAAAGAGCAAGGCCGAGGCTGAGACCCTGTACCAGACCAAGATCCAGGAGCTGCAGGT
CACAGCAGGCCAGCATGGGGATGACCTCAAGCTCACCAAGGCTGAAATCTCTGAGCTCAACCGCCTGATC
CAGAGGATCCGCTCAGAGATAGGGAATGTGAAGAAGCAGTGTGCCGATCTGGAGACGGCCATCGCCGACG
CTGAACAGCGGGGGGACTGCGCCCTGAAAGATGCCCGGGCCAAGCTGGATGAGCTGGAGGGCGCCCTGCA
CCAGGCCAAGGAGGAGCTGGCACGGATGCTGCGTGAGTACCAGGAGCTCGTGAGCCTGAAGCTGGCCCTG
GATATGGAGATCGCCACCTACCGCAAGCTGCTGGAGAGCGAGGAGTGCAGGATGTCTGGCGAATATCCAA
ATTCTGTGAGCATCTCCGTCATCAGCAGCACCAATGCTGGGGCAGGAGGGGCTGGCTTCAGCATGGGCTT
TGGCGCCTCAAGCAGTTATAGCTACAAAACTGCAGCTGCAGACGTCAAGACCAAAGGCAGCTGTGGCAGT
GAGCTCAAGGATCCCCTTGCCAAAACCTCGGGGAGCAGCTGTGCCACCAAAAAGGCCTCCAGATGA

Translation (511 aa):
MSRQLTHFPRGERLGFSGCSAVLSGGIGSSSASFRARVKGSASFGSKSLSCLGGSRSLALSAAARRGGGR
LGGFVGTAFGSAGLGPKCPSVCPPGGIPQVTVNKSLLAPLNVEMDPEIQRVRAQEREQIKALNNKFASFI
DKVRFLEQQNQVLETKWNLLQQLDLNNCRKNLEPIYEGYISNLQKQLEMLSGDGVRLDSELRNMQDLVED
YKKRYEVEINRRTAAENEFVVLKKDVDAAYMNKVELQAKVDSLTDEIKFFKCLYEGEITQIQSHISDTSI
VLSMDNNRDLDLDSIIAEVRAQYEEIALKSKAEAETLYQTKIQELQVTAGQHGDDLKLTKAEISELNRLI
QRIRSEIGNVKKQCADLETAIADAEQRGDCALKDARAKLDELEGALHQAKEELARMLREYQELVSLKLAL
DMEIATYRKLLESEECRMSGEYPNSVSISVISSTNAGAGGAGFSMGFGASSSYSYKTAAADVKTKGSCGS
ELKDPLAKTSGSSCATKKASR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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